Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d05
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   4.9  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   4.9  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   4.9  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   8.6  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   8.6  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 39  QIRVVVAVMIFCGYFFIYVIRYNIS 113
           Q  V+ A++ F G FF+Y+  YN +
Sbjct: 895 QYMVLCAIVQFSGVFFLYLKNYNFN 919


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 147 REGGNNYSSLIIGRQNRKSGVIDMMNWDDMKMAVIFSAYHIGYCICFPI 293
           R+  +     +I  QNR     D+MN+D+M+M  I         IC P+
Sbjct: 548 RDHADELLQTLISLQNR----FDLMNFDEMQMTAIVELLLTCLDICGPV 592


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 67  YFAVIFLFTSYVTILVC 117
           Y ++IFLF +YV  +VC
Sbjct: 35  YISIIFLFLNYVVDIVC 51


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 369 NLTLPMIAQLLQLPIWVQVY 310
           N+ +PMI Q+L+  +WV  Y
Sbjct: 310 NVEMPMIPQILEKGLWVSKY 329


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 346 PAITTTHLGPSLSPRLWKIGKQMQ*PIW*AEKITAIFISSQFIMSMTPDFRF 191
           P+   +++ P +SP+LW   + M  P    E+   + ++S   ++   +FRF
Sbjct: 453 PSSYISYVTPIMSPKLWSEARNMNDPNA-FERQYVVLMNSFDFLAADDEFRF 503


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 390 MLKQE*DNLTLPMIAQLLQLPIWVQVYLQGYGRLESKCNN 271
           M  QE  N+TL  +  L  L +WV++Y      L  +C N
Sbjct: 15  MKTQEIKNVTLEDVDFLKNLGVWVEIYHHLEKGLLQQCFN 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,622
Number of Sequences: 5004
Number of extensions: 57102
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)