Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d04
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    88   1e-18
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    58   2e-09
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.3  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   4.4  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    26   5.8  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.6  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   7.6  

>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
 Frame = +3

Query: 246 LHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKG 425
           L+  I  + +  LNE++  SGK VFKPWD R D +  VESDAD++LLF +PF G   LK 
Sbjct: 24  LYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTDIVESDADDQLLFQVPFAGAATLKS 83

Query: 426 IKVASEDTDSHPSKLRLFKNRPNMTFDDV-MIEPDQVFELQKDTDG--ILEYCPKIVTFS 596
           I V     ++ P    LF NR ++ FD +  ++  + FE     +G  I E+  K   + 
Sbjct: 84  ILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETFEFPLTFEGSHIFEFPVKTRLYQ 143

Query: 597 SVSHLTMHFPRTLG 638
           ++ +L + F ++ G
Sbjct: 144 NLQNLNIFFTKSDG 157


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
 Frame = +3

Query: 258 IDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKV- 434
           I+   LECLN+  +   KS F       + S F+ESD DE+L+  IPF   +K+  I + 
Sbjct: 133 IENPQLECLNQQDDHDLKSAFNS-----NPSSFLESDVDEQLMIYIPFLEVVKVHSIAIT 187

Query: 435 -ASEDTDSHPSKLRLFKNRP-NMTFDDV-MIEPDQVFE-LQKDTDGILEYCP-KIVTFSS 599
               +T S P  ++L+ N+P N++F+D     P QV E +  + D      P + V F  
Sbjct: 188 PVKGETSSAPKTIKLYINQPNNLSFEDAESFTPTQVIEDIVYEQDDQPTIIPLRFVKFQR 247

Query: 600 VSHLTMHFPRTLGQKQ 647
           V+ L +     +G+++
Sbjct: 248 VNSLVIFIYSNVGEEE 263


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 432 VASEDTDSHPSKLRLFKNRP--NMTFDDVMIEPD 527
           +AS DTDSH S   L K RP  N+ ++D  ++ D
Sbjct: 21  LASIDTDSHLSPKVLEKLRPTENLAYEDDSLDDD 54


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 434 NLYSFKFYISSEWYIKQQFFISITFNKFASIQSFVPRF 321
           NLY F + +   W+ ++   I+IT + F    +F+P F
Sbjct: 204 NLYEFSYQLEEGWFSRRCSKINITGSVF---DNFIPSF 238


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 273 LECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGN 410
           L+  NE LE  G S F  +  R+  SKF + D          F GN
Sbjct: 167 LDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGN 212


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 291 IRSNIPSGPNQSFHEDCIVYQYLQHYRDHGHGYNDDETF 175
           IR N     N   + D   Y Y+QH R+ G   N+D T+
Sbjct: 63  IRPNEGEAANYGIYFDDTEYDYMQHLRNIG---NEDATW 98


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 135 LRLSQNTIDSCVFYVLLVLNLYK--LHHNLAI 46
           LRLSQN ID+ V ++     L K  LH +LA+
Sbjct: 434 LRLSQNDIDNVVKFLTSCYKLKKLVLHDSLAL 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,406
Number of Sequences: 5004
Number of extensions: 60344
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)