Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18d04
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0291 + 32882831-32882998,32883238-32883361,32884528-328845... 52 6e-07
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560... 49 4e-06
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 38 0.006
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416 29 3.4
06_01_0249 - 1877327-1877331,1877385-1877495,1877557-1877632,187... 28 6.0
09_04_0702 - 19587943-19588168,19588423-19588525,19588809-195889... 28 7.9
>03_06_0291 +
32882831-32882998,32883238-32883361,32884528-32884576,
32884672-32884732,32884871-32884917,32885005-32885082,
32885462-32885510
Length = 191
Score = 51.6 bits (118), Expect = 6e-07
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Frame = +3
Query: 237 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 416
Q +L + ID +ECLN+ S + K R D ++ SD+DE+LL +IPF +K
Sbjct: 27 QVDLVDFIDWSGVECLNQDPAHSIVNALKQ-GYRDDEGLYLASDSDEQLLIHIPFMQVVK 85
Query: 417 LKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCP---KIV 587
L + D P ++LF N+ +M F +V P L ++ + E P K V
Sbjct: 86 LHSALFKGPEEDG-PKTIKLFCNKEHMGFSNVNDYPPS-DSLDLSSNHLSESKPMQLKYV 143
Query: 588 TFSSVSHLTM 617
F +V LT+
Sbjct: 144 KFQNVRSLTI 153
>01_05_0343 + 21155237-21155496,21155596-21155842,21155939-21156064,
21156291-21156428,21156513-21156650,21156756-21157013,
21157404-21157541,21158023-21158092,21158267-21158480,
21158614-21158719,21159844-21160077,21160836-21161000,
21161083-21161232,21161308-21161399,21161631-21161712,
21161800-21161883,21161980-21162096,21162179-21162289,
21162698-21162892,21164495-21164575,21165671-21165720,
21165978-21165990,21166518-21166600,21166693-21166833,
21166879-21166936,21167023-21167072,21167474-21167582,
21167666-21167727,21168321-21168363
Length = 1204
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 471 RLFKNRPNMTFDDVM-IEPDQVFELQKDTDGILEYCPKIVTFSSVSHLTMHFPRTLG 638
R+F NR + F+D ++P Q +EL ++ G+LEY + F V++LT+HFP G
Sbjct: 1097 RMFINREGIDFNDAQNMQPVQEWELAENLQGVLEYQTRYSRFQGVANLTLHFPENFG 1153
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/41 (63%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
Frame = +3
Query: 282 LNESLEGSGKSVFKPWDKRLDRS-KFVES-DADEELLFNIP 398
LNES+ GS KSVFKPW++RLD S F+ES + D ELL IP
Sbjct: 979 LNESVAGSVKSVFKPWEQRLDTSGGFLESNEGDPELLVFIP 1019
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2
Query: 626 KNFGAETTKIYYIGLKGE 679
+NFG +TTKIYYIGL+GE
Sbjct: 1150 ENFGGDTTKIYYIGLRGE 1167
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 38.3 bits (85), Expect = 0.006
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Frame = +3
Query: 285 NESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSHPS 464
+ES+EG +F +D+R DR VE+ DE +I G++K K + +++ T S
Sbjct: 158 SESMEG----LFS-FDERKDRRSDVENSEDERRRLSI---GSLKKKALNASNKLTHSLKK 209
Query: 465 K-LRLFKNRPNMTFDDVMIEPDQ--VFELQKD 551
+ R +NRP+ T +DV E ++ VF Q++
Sbjct: 210 RGKRKVENRPSFTIEDVRDEEEERAVFSFQQE 241
>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
Length = 1030
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 564 LEYCPKIVTFSSVSHLTMHFPRTLGQ 641
LE P +VTF+ +SHL + F R G+
Sbjct: 626 LENSPSLVTFTHLSHLNLSFNRLQGE 651
>06_01_0249 -
1877327-1877331,1877385-1877495,1877557-1877632,
1877788-1877868,1877950-1878113,1878211-1878565
Length = 263
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 213 GSVEDIGIQYNLHEKIDLDHLECLNESLEGSGK 311
G+V+ I +NLHE D D L ES +G+ +
Sbjct: 212 GNVDTTQILHNLHEARDTDELAGFEESWKGNAR 244
>09_04_0702 -
19587943-19588168,19588423-19588525,19588809-19588923,
19589061-19589086,19589178-19589398,19589493-19589608,
19589695-19589953,19590052-19590139,19590236-19590307,
19590401-19590476,19590746-19590809,19591139-19591259,
19592391-19592451,19592682-19592828
Length = 564
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 60 GVIYISSKQVKHKTHSCRWYFGII 131
GV + S ++ +++ HS RWY G +
Sbjct: 521 GVDFASPERTRYQRHSARWYAGFL 544
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,514,789
Number of Sequences: 37544
Number of extensions: 314574
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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