Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18d04
(679 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15313-11|AAK68622.1| 208|Caenorhabditis elegans Hypothetical p... 136 2e-32
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 50 1e-06
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 50 1e-06
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 50 1e-06
Z73969-11|CAE17696.1| 132|Caenorhabditis elegans Hypothetical p... 28 7.0
Z68493-7|CAA92793.1| 339|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related... 28 7.0
AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related ... 28 7.0
Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical pr... 27 9.3
U00043-6|AAC77507.1| 487|Caenorhabditis elegans Hypothetical pr... 27 9.3
>L15313-11|AAK68622.1| 208|Caenorhabditis elegans Hypothetical
protein ZK353.9 protein.
Length = 208
Score = 136 bits (328), Expect = 2e-32
Identities = 60/139 (43%), Positives = 96/139 (69%)
Frame = +3
Query: 237 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 416
+Y++ ID++ + LNES++G+GK VFK +KR DR ++VESD D ELLFNIPFTG+++
Sbjct: 25 RYDMVSYIDMEKVTTLNESVDGAGKKVFKVMEKRDDRLEYVESDCDHELLFNIPFTGHVR 84
Query: 417 LKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCPKIVTFS 596
L G+ + ++ SHP+K+RLFK+R M+FDD IE DQ +L++D G+++Y K F
Sbjct: 85 LTGLSIIGDEDGSHPAKIRLFKDREAMSFDDCSIEADQEIDLKQDPQGLVDYPLKASKFG 144
Query: 597 SVSHLTMHFPRTLGQKQQK 653
++ +L++ G+ + K
Sbjct: 145 NIHNLSILVDANFGEDETK 163
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 629 NFGAETTKIYYIGLKGE 679
NFG + TKIYYIGL+GE
Sbjct: 156 NFGEDETKIYYIGLRGE 172
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Frame = +3
Query: 237 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 416
Q +L +D +ECLNES + P + L+ + + SD DE+L+ ++PF +K
Sbjct: 118 QMDLTPLVDKKQMECLNESDD-------TPLGRFLEGNCNLVSDCDEQLIISLPFNQPVK 170
Query: 417 LKGIKVASEDTDSHPSKLRLFKNRPNMT-FDD-VMIEPDQVFELQKDT-DGILEYCP-KI 584
+ I + +D P K+++F N P T FD+ +EP Q+ E + + G + K
Sbjct: 171 VHSILIKGV-SDRAPKKVKVFINLPKTTDFDNATALEPTQMLEFDESSIQGHGQVVALKY 229
Query: 585 VTFSSVSHLTMHFPRTLG 638
V F +V ++ +G
Sbjct: 230 VKFQNVQNIQFFIENNVG 247
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Frame = +3
Query: 237 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 416
Q +L +D +ECLNES + P + L+ + + SD DE+L+ ++PF +K
Sbjct: 118 QMDLTPLVDKKQMECLNESDD-------TPLGRFLEGNCNLVSDCDEQLIISLPFNQPVK 170
Query: 417 LKGIKVASEDTDSHPSKLRLFKNRPNMT-FDD-VMIEPDQVFELQKDT-DGILEYCP-KI 584
+ I + +D P K+++F N P T FD+ +EP Q+ E + + G + K
Sbjct: 171 VHSILIKGV-SDRAPKKVKVFINLPKTTDFDNATALEPTQMLEFDESSIQGHGQVVALKY 229
Query: 585 VTFSSVSHLTMHFPRTLG 638
V F +V ++ +G
Sbjct: 230 VKFQNVQNIQFFIENNVG 247
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Frame = +3
Query: 237 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 416
Q +L +D +ECLNES + P + L+ + + SD DE+L+ ++PF +K
Sbjct: 118 QMDLTPLVDKKQMECLNESDD-------TPLGRFLEGNCNLVSDCDEQLIISLPFNQPVK 170
Query: 417 LKGIKVASEDTDSHPSKLRLFKNRPNMT-FDD-VMIEPDQVFELQKDT-DGILEYCP-KI 584
+ I + +D P K+++F N P T FD+ +EP Q+ E + + G + K
Sbjct: 171 VHSILIKGV-SDRAPKKVKVFINLPKTTDFDNATALEPTQMLEFDESSIQGHGQVVALKY 229
Query: 585 VTFSSVSHLTMHFPRTLG 638
V F +V ++ +G
Sbjct: 230 VKFQNVQNIQFFIENNVG 247
>Z73969-11|CAE17696.1| 132|Caenorhabditis elegans Hypothetical
protein C12D8.15 protein.
Length = 132
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +3
Query: 309 KSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNR 488
+ V K KRL++ + E +D E+ +P+ ++ + I ++SE+ +L +
Sbjct: 50 EEVGKAIGKRLNQCEKGECYSDVEI--EVPYYSSVNMPQILLSSEEHPPEYYELESARAS 107
Query: 489 PNMTFDDVM 515
P ++DDVM
Sbjct: 108 PLPSYDDVM 116
>Z68493-7|CAA92793.1| 339|Caenorhabditis elegans Hypothetical
protein C33A12.10 protein.
Length = 339
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -3
Query: 428 YSFKFYISSEWY-----IKQQFFISITFNKFASIQSFVPRFKNTFTRTLKGFVQTFQVVQ 264
Y FK Y++S W Q F+ I+ ++F F+ F T + F +
Sbjct: 50 YIFKIYLTSNWKKSEPGKNQHVFLVISLSQFTCFLLFLTDFLMTRLPSTGIFTSFCASIP 109
Query: 263 INLFMKIVLYTNIF 222
N ++KI+L + ++
Sbjct: 110 PNHYLKIILVSALY 123
>AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
b protein.
Length = 548
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = +3
Query: 234 IQYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNI 413
I NL E +D N S ++ + + K LD K E + F+ +
Sbjct: 141 INGNLAENLDFKQETTENPSGSDDFQAENEKYLKSLDFEKIQEMKLEITERFDPKLLEFL 200
Query: 414 KLKGIKVASEDTDSHPSKLRLFK 482
K +G K ASE+T P K+ FK
Sbjct: 201 KNRGNK-ASEETQKKPKKISKFK 222
>AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
a protein.
Length = 660
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = +3
Query: 234 IQYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNI 413
I NL E +D N S ++ + + K LD K E + F+ +
Sbjct: 141 INGNLAENLDFKQETTENPSGSDDFQAENEKYLKSLDFEKIQEMKLEITERFDPKLLEFL 200
Query: 414 KLKGIKVASEDTDSHPSKLRLFK 482
K +G K ASE+T P K+ FK
Sbjct: 201 KNRGNK-ASEETQKKPKKISKFK 222
>Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical
protein M163.5 protein.
Length = 435
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 408 NIKLKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQ--KDTDGILEYCPK 581
N+K +V + SH S ++F+N+ F M DQ+++++ K +L
Sbjct: 367 NLKSIVSQVGGSEYTSHVSLNKMFENKIVEMFHATMFSMDQIYQIETLKTKREVLTEGMY 426
Query: 582 IVTFSSVSH 608
+ FS++ H
Sbjct: 427 FLIFSNLKH 435
>U00043-6|AAC77507.1| 487|Caenorhabditis elegans Hypothetical
protein T26A5.4 protein.
Length = 487
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -3
Query: 125 PKIPSTAVCFMFYLF*TYINYTTIWRFFIFETISRR 18
P +P+ VCFMF +F + ++ W +++ + +
Sbjct: 117 PALPTMIVCFMFSIF-KFAKFSIDWHNYMYSILQNK 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,964
Number of Sequences: 27780
Number of extensions: 325723
Number of successful extensions: 831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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