Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18d02
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 30 0.29
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 2.7
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 2.7
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 2.7
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 27 2.7
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 3.5
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 3.5
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 4.7
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 6.2
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 6.2
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 29.9 bits (64), Expect = 0.29
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +3
Query: 426 DVALSRLSADENSCVKCEKI------IDEIFGKDAKWDDKYMLGNATRLPNEDLTILP 581
D++L +L E + C I DE F K A D Y++GN + EDL+ LP
Sbjct: 718 DLSLEKLPTLEINTFNCPAISYFETSFDECFSKFAS-SDNYIIGNLLKTNQEDLSNLP 774
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 2.7
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 153 TAAVRTVNKANPAAFLFRISLADCNTHGKIAKSIAIL---QSKLQKSTKSGSEDEAKCAK 323
T+ VR ++ L +I+ +D TH ++ IA+L +++ K + S + C K
Sbjct: 79 TSIVREISSRTFTDSLLKIA-SDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEK 137
Query: 324 CKK--IIDLVFGPNKP 365
+K I+DL P KP
Sbjct: 138 IRKLDIVDL-RAPKKP 152
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 565 SSLGKRVAFPSMYLSSHFASLPKISSIIFSHLTQLFSSALNLDKAT 428
+S+G + S YL S A + K+ S+ S L + S+ LN+ T
Sbjct: 870 TSIGLLLGLASSYLGSMDAKVTKLLSVHISALLPVGSNELNISPLT 915
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -2
Query: 493 SSIIFSHLTQLFSSALNLDKATSLHLSLALLKTCASLESSCT 368
S + + LT+LF ++ + KA++ + LLKTC+ L SSC+
Sbjct: 500 SDTLDAWLTRLFETSFAI-KASAFQ-NPQLLKTCSQLLSSCS 539
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 237 KIAKSIAILQSKLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSKDAHV 398
++ +SI ++ ST K I+ FG K IVHE SKD ++
Sbjct: 315 ELYQSILRKRANQVSSTSLTKSSSPKPLPSSAIVKFDFGNGKSIVHEFSKDDNI 368
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 375 EDSKDAHVFNKASDKCKDVALSRLSADEN 461
E SK V +++SD+ KD ++R++AD++
Sbjct: 53 ETSKKLLVSHESSDRLKDQEVARINADDD 81
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -2
Query: 529 YLSSHFASLPKISSIIFSHLTQLFSSALNLDKATSLHLSLALLKTCASLESSCTIGLLGP 350
Y+S H+ L +ISS + S+ + S+ N +K + L + +L ++ C P
Sbjct: 306 YISLHYDFLGQISSHLSSYKEKFEESSKNFEKLVIMSLRVFIL----VIQEFCNTKSSHP 361
Query: 349 NTKSIIF 329
T +++
Sbjct: 362 ETAQVLY 368
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 270 KLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPI 368
KL S++ S+D+ K CK +D+ G + PI
Sbjct: 57 KLDPSSEDFSQDDQKQIFCKLCVDICNGCSTPI 89
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -1
Query: 149 HFVSKLEVMGVTSVENYIFIFFLYRYMIFFIFENY 45
HF+ K+ + V + F F + ++F+IF ++
Sbjct: 102 HFLEKISMFDTFLVRVFQFCAFFFGGIVFYIFNHF 136
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3
Query: 543 HSPA--CTYHPTLRLYQRSHQLSSRI*HNYFHRHLISIKQHLCIY 415
H P C Y L Y S++ ++I H FH +L I ++ Y
Sbjct: 144 HGPKGMCDYCSPLEPYDESYRQENKIKHLSFHAYLRKINSNVNKY 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,463
Number of Sequences: 5004
Number of extensions: 46971
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -