Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18c24
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 92 5e-20
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 86 3e-18
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 48 1e-06
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 33 0.046
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 28 0.98
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 9.1
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 9.1
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 92.3 bits (219), Expect = 5e-20
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Frame = +1
Query: 214 LAASRRIVGAVVRTPCTRAHM-SERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQK 390
L + + + TP T+ + SE G+ +Y K+E L SFK RG N + SL +
Sbjct: 101 LTLTSNVYEVIKETPLTKGVVISESTGVPVYLKREDLTPVFSFKIRGAHNKMASLDKQSL 160
Query: 391 KNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGIDMSAA 570
KNGVIA S GNH ++Y + LG+ +V+P +T K ++LGA V HG + A
Sbjct: 161 KNGVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGANVLLHGANFDIA 220
Query: 571 QLHAMSLGKEKKMIYINGYDHP 636
+ L KE+ + I+ +D P
Sbjct: 221 KAECARLAKEQNLEVIHPFDDP 242
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 86.2 bits (204), Expect = 3e-18
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Frame = +1
Query: 202 YDDILAASRRIVGAVVRTPC-TRAHMSERLGMDIYFKQEFLQYTGSFKERGVRNALISLS 378
YDD+ +AS RI +TP T + +++ +++FK E Q G+FK RG NAL L+
Sbjct: 10 YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69
Query: 379 DEQKKNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGID 558
+ Q+K GV+ S+GNH A++ + LGIP +++P+ KV + G +V +
Sbjct: 70 EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY 129
Query: 559 MSAAQLHAMSLGKEKKMIYINGYDHP 636
+ A + + + + I YDHP
Sbjct: 130 KDDREKMAKEISEREGLTIIPPYDHP 155
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 47.6 bits (108), Expect = 1e-06
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = +1
Query: 235 VGAVVRTPCTRAH-MSERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQK--KNGVI 405
+GA+ RTP R + +S G +I K EF GS K+R + + K + G I
Sbjct: 18 IGAIGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRGGTI 77
Query: 406 AAST-GNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKV 540
T GN G L++ + G C++ +P + K++ + LGA+V
Sbjct: 78 VEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEV 123
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 32.7 bits (71), Expect = 0.046
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Frame = +1
Query: 232 IVGAVVRTPCTRAH-MSERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQ------K 390
+ G + T R +S+ G DI K EFL S K+R V +I ++E +
Sbjct: 46 VEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDR-VALQMIRTAEENGDLVPYQ 104
Query: 391 KNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKV 540
N V + G+ G +++ LG + +P + K + E LGA V
Sbjct: 105 SNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHV 154
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 28.3 bits (60), Expect = 0.98
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 223 SRRIVGAVVRTPCTRAHMSERLGMDIYFKQEFLQYTGSFKE-RGVRNALIS 372
+R I G V+R + + ++ D +FK +F + G F++ R V LIS
Sbjct: 265 NRAIEGFVIRCHSDHSSLEQQSSNDFFFKYKFPEPYGMFRQWREVTKMLIS 315
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 178 PNNPRKIKYDDILAASRRIVGAVVRTPCTRAHMSERLG 291
P+ P + K+D I ++I+ + +RT C + E G
Sbjct: 224 PSVPGEYKFDSIKPLLQKIILSSIRTKCEVVTLDEHEG 261
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 476 WSYLFIPLSTKLTNANSSERKFSS 547
WS +P+ST T+A SS F+S
Sbjct: 126 WSNTSVPVSTPETSATSSSEFFTS 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,276
Number of Sequences: 5004
Number of extensions: 57036
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -