Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18c24
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 88 5e-18
04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981... 74 1e-13
01_06_0353 - 28647452-28647477,28647568-28649134 43 2e-04
05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531 39 0.003
03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605... 38 0.007
04_01_0339 - 4429742-4429840,4429932-4430012,4430232-4430291,443... 38 0.009
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202... 35 0.062
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 28 5.4
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 27 9.4
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 88.2 bits (209), Expect = 5e-18
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Frame = +1
Query: 223 SRRIVGAVVRTPCTRA-HMSERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNG 399
S ++ + +P A +SERLG++++ K+E LQ SFK RG N + LS EQ + G
Sbjct: 106 SSKVYDVAIESPLQLATKLSERLGVNLWIKREDLQPVFSFKLRGAYNMMAKLSREQLERG 165
Query: 400 VIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGIDMSAAQLH 579
VI +S GNH ++ + +LG ++V+P+ T K E+LGA V G AQ +
Sbjct: 166 VICSSAGNHAQGVALSAQRLGCDAVIVMPVTTPEIKWRSVERLGATVVLKGDSYDEAQSY 225
Query: 580 AMSLGKEKKMIYINGYDHP 636
A +++ +I +DHP
Sbjct: 226 AKQRCEQEGRTFIPPFDHP 244
>04_04_0753 -
27797298-27797547,27797765-27797951,27798040-27798113,
27798719-27798949,27799047-27799133,27799244-27799434
Length = 339
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Frame = +1
Query: 211 ILAASRRIVGAVVRTPCTRAHMSERL-GMDIYFKQEFLQYTGSFKERGVRNALISLSDEQ 387
I A RI V +TP + + + G ++FK E Q G+FK RG N++ +L D++
Sbjct: 24 IREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRGASNSIFALDDDE 83
Query: 388 KKNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGIDMSA 567
GV+ S+GNH AA++ + GIP +V+P + KV+ ++ G + + + +
Sbjct: 84 ASKGVVTHSSGNHAAAVALAAKLRGIPAYIVIPRNAPACKVDNVKRYGGHIIWSDVSIES 143
Query: 568 AQLHAMSLGKEKKMIYINGYDH 633
+ A + +E I ++ +++
Sbjct: 144 RESVAKRVQEETGAILVHPFNN 165
>01_06_0353 - 28647452-28647477,28647568-28649134
Length = 530
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Frame = +1
Query: 280 ERLG--MDIYFKQEFLQYTGSFKERGVRNALISLSDEQKK-------NGVIAASTGNHGA 432
E LG D++ K + +TGSFK+ G+ L+S + ++ NGV ASTG+ A
Sbjct: 181 EHLGGMTDLWVKHCGISHTGSFKDLGM-TVLVSQVNRLRRAPLSRPINGVGCASTGDTSA 239
Query: 433 ALSYHSTQLGIPCIVVVP 486
ALS + GIP IV +P
Sbjct: 240 ALSAYCAAAGIPAIVFLP 257
>05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531
Length = 588
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Frame = +1
Query: 295 DIYFKQEFLQYTGSFKERGVRNALISLSDEQKKN-------GVIAASTGNHGAALSYHST 453
D++ K + +TGSFK+ G+ L+S + ++ GV ASTG+ AALS +
Sbjct: 184 DLWVKHCGISHTGSFKDLGM-TVLVSQVNRLRRAPLSRPIAGVGCASTGDTSAALSAYCA 242
Query: 454 QLGIPCIVVVP 486
GIP IV +P
Sbjct: 243 AAGIPAIVFLP 253
>03_02_0162 +
6053144-6053365,6053474-6053548,6054477-6054623,
6054749-6055300,6055387-6055622,6055914-6056130
Length = 482
Score = 37.9 bits (84), Expect = 0.007
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +1
Query: 232 IVGAVVRTPCTRAH-MSERLGMDIYFKQEFLQYTGSFKER---GVRNALISLSDEQKKNG 399
+V A+ TP R + +S+ G +I K EFL GS K+R + + D
Sbjct: 52 LVEAIGNTPLIRINSLSDATGCEILGKAEFLNPGGSVKDRVAVKIIEEALESGDLLCGGT 111
Query: 400 VIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKV 510
V S G+ +L+ + G C VV+P A+ KV
Sbjct: 112 VTEGSAGSTAISLAIVAPAYGCKCHVVIPDDAAIEKV 148
>04_01_0339 -
4429742-4429840,4429932-4430012,4430232-4430291,
4430715-4430794,4430923-4430974,4431045-4431182,
4431449-4431712,4432031-4432088,4433261-4433370,
4433604-4433795
Length = 377
Score = 37.5 bits (83), Expect = 0.009
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Frame = +1
Query: 250 RTPCTRAH-MSERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNGV-------I 405
RTP + ++E G I K EFLQ + S K+R A+ L D +KK + I
Sbjct: 68 RTPMVYLNKVTEGCGARIAAKLEFLQPSFSVKDRP---AISMLEDAEKKGLITPGKTTLI 124
Query: 406 AASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKV 540
++GN G L++ + G I+ +P +T+L + GAK+
Sbjct: 125 EPTSGNMGIGLAFMAALKGYELILTMPSYTSLERRVTMRAFGAKL 169
>08_01_0245 +
2023442-2023786,2024485-2024841,2024951-2025393,
2025475-2025569,2026302-2026477
Length = 471
Score = 34.7 bits (76), Expect = 0.062
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Frame = +1
Query: 289 GMDIYFKQEFLQYTGSFKERGVRNAL--ISLSDEQKKNGVIAAS-TGNHGAALSYHSTQL 459
G IY K+E L +TG+ K + NA+ + L+ K +IA + G HG A + +
Sbjct: 149 GPMIYLKREDLNHTGAHK---INNAVAQVLLAKRLGKERIIAETGAGQHGVATATVCARF 205
Query: 460 GIPCIVVVPI----HTALNKVNKCEQLGAKV 540
G+ CI+ + ALN V + + LGA+V
Sbjct: 206 GLQCIIYMGAQDMERQALN-VFRMKLLGAEV 235
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Frame = +1
Query: 355 RNALISLSDEQKKN----GV---IAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVN 513
R+AL + D ++K GV + ++GN G ++Y++ G + V+P +L+K
Sbjct: 67 RSALRMIEDAEEKGLISPGVTTLVEPTSGNLGIGVAYNALLKGYRFVAVMPAEYSLDKQM 126
Query: 514 KCEQLGAKV 540
LGA+V
Sbjct: 127 LLTYLGAEV 135
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 459 RDTVHSGRTYSYRSQQS*QMRTARSESFQARNRHVSGPITRNEFR 593
R T H+ R + Q+R +R E+ + RNRH + R+ R
Sbjct: 246 RQTAHAMRCMQMLVRVQSQVRASRVEAMERRNRHHHAAMLRDAAR 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,414
Number of Sequences: 37544
Number of extensions: 322841
Number of successful extensions: 750
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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