Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c23
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   1.4  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   3.2  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   5.6  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 332 QYSLDPCIPLRLPQRGAVPCDLARYRSTAVLESQKTIVHHRPPKCF*NLKTISKQSTKL 156
           Q S  P + LR   R +   DL+   +++VLE+Q  I   RP +   N K +S   T +
Sbjct: 747 QSSSIPVLDLR--DRSSAISDLSLSTASSVLEAQSLITPERPKRPSLNEKLLSLDGTSI 803


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 245 PRYFGILQDHRGQPLSVEVSEEYMDQ 322
           P+Y  +L+ H  +P  V V++E +DQ
Sbjct: 219 PQYEQLLESHTNRPNDVYVTQELIDQ 244


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/52 (19%), Positives = 24/52 (46%)
 Frame = +3

Query: 309 NTWIKTILLLIGNGTKWTGIKXXXXXXXXXXXXRKKYSTKKIKTLNYQINTI 464
           N W+K ++ ++ + T W  ++             K + TK ++ L   +N++
Sbjct: 679 NEWVKNVMYIVTHETDWKVVQYILINFTNQLRNTKMF-TKTVEALQLLLNSL 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,894
Number of Sequences: 5004
Number of extensions: 31789
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)