Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c23
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323           27   7.5  
04_04_0819 - 28312667-28313219,28315157-28316430                       27   7.5  
12_01_0962 - 9579051-9579707,9579804-9580706                           27   9.9  
11_06_0373 - 22786217-22786426                                         27   9.9  

>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
          Length = 905

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 290 RGAVPCDLARYRSTAVLESQKTIVHHRPPKCF*NLKTIS 174
           RG++P +L   RS  VL+  +  +    P+CF +L  +S
Sbjct: 818 RGSIPEELGNLRSLEVLDLSRNDLSGPIPQCFLSLSGLS 856


>04_04_0819 - 28312667-28313219,28315157-28316430
          Length = 608

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 320 DPCIPLRLPQRGAVPCDLARYRSTAVLESQKTIV 219
           +PC+PLR+ ++G    D     S  VLE+ +  V
Sbjct: 506 EPCLPLRIARQGLSRRDTYTSESLVVLEAHEAAV 539


>12_01_0962 - 9579051-9579707,9579804-9580706
          Length = 519

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 329 YSLDPCIPLRLPQRGAVPCDLARY 258
           + L P +PL +P+    PC L  Y
Sbjct: 365 FRLHPAVPLLVPRESVAPCTLGGY 388


>11_06_0373 - 22786217-22786426
          Length = 69

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 248 RYFGILQDHRGQPLSVEVSEEYMDQDYIATNRKRHKMDWN 367
           R F   ++HRG  + V  S EY + D    +    +MDW+
Sbjct: 17  RRFWAWENHRGFLVDVGASVEYEEDDDYDYDGDHQEMDWD 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,197,950
Number of Sequences: 37544
Number of extensions: 186617
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)