Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c20
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.3  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 611 IRFNSFNLMSFN 576
           IRF SF+L++FN
Sbjct: 139 IRFKSFSLLNFN 150


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 248 ILHNNICNETYSVDFHV 198
           I H N+   +++VDFHV
Sbjct: 68  IQHYNVDEYSHTVDFHV 84


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 586 IRLNELNRISILGDQELQSPLKPNHTSVY 672
           I+L E N I +LG+    S L PN  +VY
Sbjct: 334 IQLTEKNGIDVLGNIMEASILSPNQ-NVY 361


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 510 MNSASVYLLGNFNELYQGNIS 448
           MN ++VYLLG+  E  Q N S
Sbjct: 1   MNESAVYLLGSEEEGNQLNRS 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,821
Number of Sequences: 438
Number of extensions: 3792
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)