Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c19
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.66 
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   1.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   2.7  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   4.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   4.7  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   6.2  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    25   8.2  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.2  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   8.2  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 395 SPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISH 234
           S F+STT  +++    +ST SSS  +  S+  S       P ++  +  SL SH
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 190 PWQEWSDHYTCHRYRCEIRDG 252
           P+Q+W D+Y C  Y   +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 440 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 297
           S +SSP      T  SP +S++  + +    +S+ SSS  S  SS+ S
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -2

Query: 360 TARGEFDILIFDVFVAFQCVFRYFWFSTSDSSYEVFPVS 244
           T +GE      D+ +  + V++ +W  +  ++  +FPV+
Sbjct: 229 TEQGELSFKKGDIILVLESVYKDWWKGSCKNAVGIFPVN 267


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 274  GCRKPKIPENALECHEYIEDEN 339
            G  K  IP+N  EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588



 Score = 24.6 bits (51), Expect = 8.2
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +1

Query: 190  PWQEWSDHYTCHRYRCEIRDGKYFIAAV---GCRKPKIPENALE--CHEYIEDENV 342
            P+ EWS HY+    R      K F++ +     RK + P   LE     Y + +N+
Sbjct: 849  PYSEWSAHYSALVNRISPVLDKLFVSIIEKARSRKAEFPAKQLEVAIQTYCDGQNL 904


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 3   LRNSLKKQGVLTFSYYGWRPENT 71
           +R+  ++ GVL   +YGW+PEN+
Sbjct: 570 VRSKGQEDGVL---FYGWKPENS 589


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 310 ECHEYIEDENVEFPT 354
           ECHE I++E+V+ P+
Sbjct: 101 ECHELIQEESVKSPS 115


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 210 SLHVPPLQMRDQRREILHSCC 272
           S+HVPPL + +   EI  S C
Sbjct: 848 SIHVPPLNVPNAEGEIEESVC 868


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 422 GCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSW 315
           GC L C ILSP      R R  HV + T     +SW
Sbjct: 377 GCALSCAILSP----VFRVREFHVHDVTTYPITFSW 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,756
Number of Sequences: 5004
Number of extensions: 45927
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)