Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c19
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)                  30   0.90 
SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)                    29   2.8  
SB_43702| Best HMM Match : SERTA (HMM E-Value=0.034)                   28   3.6  
SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         27   6.4  
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_35270| Best HMM Match : Jacalin (HMM E-Value=8.6)                   27   6.4  
SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05)                  27   8.4  
SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)                    27   8.4  

>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
          Length = 867

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 327 DVFVAFQCVFRYFWFSTSDSSYEVFPVSDLASVAVA--RVVIRPLLPRLVT 181
           D F+A     RY    T   +Y    +S +A +A++  RV + P  P +VT
Sbjct: 584 DRFIAITRPLRYITLVTKSKTYTAIVISSIACLALSLIRVFLTPYFPAVVT 634


>SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 253 KYFIAAVGCRKPKIPENALECHEYIEDENVEFPTCCARLRC 375
           K ++ A   +KP +P++    HE +    +    C  R RC
Sbjct: 22  KTYLIACLAQKPGVPQDTRHSHEPLPQRKISLIVCSTRTRC 62


>SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 369 QSRTARGEFDILIFDVFVAFQCVFRYFWFSTSDSSYEVFPVSD 241
           +SR  RG+F++LIF       CV    WF   + + E++ + +
Sbjct: 317 RSRDLRGKFELLIFSAIRKMACV---VWFENLEETTELYSLME 356


>SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 137 SADRAGKTRQHNINNAPNCFPCCIL 63
           SA+   K R H+  N  +CF CCIL
Sbjct: 279 SANDKKKKRLHDSANQKSCFTCCIL 303


>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
          Length = 1188

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 289 KIPENALECHEYIEDENVEFPT 354
           ++ E+ LEC EYI ++N EF T
Sbjct: 513 EMSESILECFEYIPEKNTEFMT 534


>SB_43702| Best HMM Match : SERTA (HMM E-Value=0.034)
          Length = 351

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 217 TCHRYRCEIRDGKYFIAAVGCRKPKIPENALECHEYIED 333
           T  R RCEI + +YF A    R     EN  +  E + D
Sbjct: 42  TVRRLRCEIENERYFTARPAKRLKMSHENKADIEEKVPD 80


>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 273 RMSKTKNTGKRTGMPRIHRR*ECRIPHVLCAIA 371
           +M  + + GK  G   IH R +CR P  LC +A
Sbjct: 367 KMVGSISNGKLMGTIDIHSRRKCRNPRSLCVVA 399


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 418 QPGELF-PDKPWKGQQNEPNP 477
           QP ELF P+ P K QQN+P P
Sbjct: 121 QPVELFAPNSPPKPQQNQPKP 141


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 354  VLCAIALRRRSKWRENSANQRAAWRTVPR*TMEGPTKR 467
            V C     R    RE     RA WR+VP  +   PTKR
Sbjct: 3168 VACLQVFARVLNAREIQQRMRACWRSVPTKSPVVPTKR 3205


>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 3   LRNSLKKQGVLTFSYYGWRPENTTREAVGSVV 98
           L + L+   +L  +++G+RP+++T  AV SVV
Sbjct: 111 LNHYLQTHNILHSNHFGFRPKHSTTHAVLSVV 142


>SB_35270| Best HMM Match : Jacalin (HMM E-Value=8.6)
          Length = 211

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 139 DVSYQACVDKYSRKGYQPWQEWSDHYT 219
           D SY    D+    GY  WQ W+D +T
Sbjct: 144 DGSYPKPHDEALEAGYDSWQAWADAWT 170


>SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05)
          Length = 922

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 474 IWLVLLALPWFIGEQFARLPSGLHYSLSIYFDDATQSRTARGEFDILIFDVFV 316
           +WL+ +     + +    L +G+ Y  S    D+T++R ARG  D L+   F+
Sbjct: 543 VWLMSMPACAEVNDAMQSL-TGVRYRTSEQHKDSTEARKARGYEDTLVVPDFL 594


>SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)
          Length = 614

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 474 IWLVLLALPWFIGEQFARLPSGLHYSLSIYFDDATQSRTARGEFDILIFDVFV 316
           +WL+ +     + +    L +G+ Y  S    D+T++R ARG  D L+   F+
Sbjct: 316 VWLMSMPACAEVNDAMQSL-TGVRYRTSEQHKDSTEARKARGYEDTLVVPDFL 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,726
Number of Sequences: 59808
Number of extensions: 356094
Number of successful extensions: 1108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)