Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c19
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   4.2  
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical ...    27   5.6  
AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
           protein F42A8.1 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 139 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAV-GC 279
           +  Y ACV    R  YQ  + W+D    + YRC   DG+     + GC
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGC 148



 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 229 YRCEIRDGKYFIAAVGCRKPKIPENALECHEYI 327
           Y+CEIR GK    AVGC    I EN  + ++ I
Sbjct: 243 YQCEIRPGKRSHRAVGC---SIVENGRDINKVI 272


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 440 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 297
           S ++SP   +  +  +P TSTT  + +    +ST SSS+ S  SS  S
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 440 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 297
           S ++SP   +  +  +P TSTT  + +    +ST SSS+ S  SS  S
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 390 IYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFW 286
           IYF D  Q    R  +   IF+ F+A  C F   W
Sbjct: 140 IYFYDIFQDSLLRNSYYSCIFNTFLAHVCDFASVW 174


>AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical
           protein T20H9.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 399 SLSIYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFWFSTSDS 268
           SLS+ FD  T+    +   D++  D F   +  F   WFST+ +
Sbjct: 219 SLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSSWFSTAQT 262


>Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical
           protein ZC455.4 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 344 STFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISHL*R 225
           ST   + YS+     S ++GF H    MKY   L +HL R
Sbjct: 11  STLFGNAYSYKFLVISPVYGFSH----MKYMAELANHLAR 46


>AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical
           protein T05G11.3 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 250 GKYFIAAVGCRKPKIPENALECHEYIE-DENVEFPTC-CARLRCVVEVNGERIVQTRGQ 420
           GK+ I+ VG  KPK+   ++     I  +  + F  C C      +   GERIVQ R +
Sbjct: 265 GKFIISQVGDDKPKLTLQSMIVGFIINFNSAIHFLLCYCLHNVFTISECGERIVQKRSR 323


>AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical
           protein F52G3.5 protein.
          Length = 386

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 106 CCLVLPALSAEDVSYQACVDKYSRKGYQPWQEWSDHYTCHR 228
           CC++ P ++  DV          RKGY+ +   +   TC R
Sbjct: 295 CCILTPQINCTDVLTGCLTHLCDRKGYRQFMTNNCAKTCAR 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,217,493
Number of Sequences: 27780
Number of extensions: 261072
Number of successful extensions: 804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)