Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c13
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    24   3.5  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    24   3.5  
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    24   3.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   4.7  

>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = -1

Query: 192 FRGHVRGR--GRGASCG 148
           F GH RGR  GRG  CG
Sbjct: 201 FDGHSRGRGAGRGGFCG 217


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 78  KRTHVRILNNLYLFLWN 128
           + +HVR L NL L LW+
Sbjct: 41  EHSHVRFLGNLVLNLWD 57


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -1

Query: 216 VQRMGRRCFRGHVRGRGRGASCG 148
           V+  GR   RG  RGRGRGAS G
Sbjct: 95  VRGRGRGRGRG-TRGRGRGASRG 116


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 121 KNKYKLFRIRTCVRFDS 71
           K KY L  +R+C+  DS
Sbjct: 557 KEKYNLLCVRSCIAIDS 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,411
Number of Sequences: 5004
Number of extensions: 7597
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)