Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c13
         (252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0361 + 14912420-14912720,14912945-14913117,14913474-149137...    32   0.074
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328...    26   3.7  
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106...    25   6.4  
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384...    25   6.4  
06_03_1336 - 29424470-29424897,29425243-29429653                       25   8.4  
04_03_0342 + 14648137-14648371,14648953-14649005                       25   8.4  
02_01_0596 - 4424565-4426535                                           25   8.4  

>04_03_0361 +
           14912420-14912720,14912945-14913117,14913474-14913779,
           14913862-14913936,14913976-14914191,14914741-14915527,
           14915587-14915681
          Length = 650

 Score = 31.9 bits (69), Expect = 0.074
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 216 VQRMGRRCFRGHVRGRGRGASCGPWLNFND-STKTNINYSEF 94
           +Q   R   +G  RGRGRGA C    +FND ++ TN N   F
Sbjct: 133 IQPQARAASQGRGRGRGRGARCRLTEDFNDRASWTNENTKLF 174


>11_01_0428 +
           3279662-3279784,3281676-3281756,3281845-3281933,
           3282011-3282085,3282211-3282269,3282316-3282414,
           3282762-3283013,3283050-3283180
          Length = 302

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 204 GRRCFRGHVRGRGRGASCG 148
           GR  FRG  RGRGRG   G
Sbjct: 203 GRGRFRGRGRGRGRGGYYG 221


>06_03_1333 -
           29410014-29410052,29410071-29410322,29410601-29410633,
           29411035-29411045,29411420-29415325,29415437-29415920
          Length = 1574

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 183 HVRGRGRGASCGPWLNFNDSTK 118
           H+ G G GA+C  WL  N S K
Sbjct: 874 HINGHG-GATCPSWLGVNLSMK 894


>03_06_0670 +
           35434203-35434355,35436601-35436729,35436978-35438409,
           35438524-35439014
          Length = 734

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 213 QRMGRRCFRGHVRGRGRGASCG 148
           Q  GRR  R   RG G G  CG
Sbjct: 16  QEEGRRTARARARGGGGGGVCG 37


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 180 VRGRGRGASCGPWLNFNDSTK 118
           + G G GA+C  WL FN S K
Sbjct: 872 IEGHG-GATCPSWLGFNLSIK 891


>04_03_0342 + 14648137-14648371,14648953-14649005
          Length = 95

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 222 GHVQRMGRRCFRGHVRGRGRGASCGP 145
           G +QR GRRC R     R   AS  P
Sbjct: 30  GSIQRCGRRCRRCQAAWRKTAASTTP 55


>02_01_0596 - 4424565-4426535
          Length = 656

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 222 GHVQRMGRRCFRGHVRGRGRG 160
           G  +  GR CFRG  RG  RG
Sbjct: 185 GRGRGRGRGCFRGRGRGFARG 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,677,037
Number of Sequences: 37544
Number of extensions: 53645
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)