Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c13
         (252 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF382388-1|AAK60270.1|  478|Homo sapiens vitronectin protein.          31   0.89 
X05006-1|CAA28659.1|  478|Homo sapiens protein ( Human S-protein...    30   1.2  
X03168-1|CAA26933.1|  478|Homo sapiens protein ( Human mRNA for ...    30   1.2  
BC005046-1|AAH05046.1|  478|Homo sapiens vitronectin protein.          30   1.2  
AL139287-7|CAI23176.1|  514|Homo sapiens cleavage and polyadenyl...    30   1.2  
AK021939-1|BAB13943.1|  499|Homo sapiens protein ( Homo sapiens ...    30   1.2  
BC110300-1|AAI10301.1|  335|Homo sapiens LARP2 protein protein.        27   8.3  
BC021176-1|AAH21176.1|  166|Homo sapiens zinc finger, CCHC domai...    27   8.3  
AK092764-1|BAC03970.1|  575|Homo sapiens protein ( Homo sapiens ...    27   8.3  

>AF382388-1|AAK60270.1|  478|Homo sapiens vitronectin protein.
          Length = 478

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -1

Query: 219 HVQRMGRRCFRGHVRGR---GRGASCGPWLNFNDSTKTNI---NYSEFERAFVLTA 70
           H  R G R  RGH RGR    R  S   WL+   S ++N+   NY ++   +++ A
Sbjct: 373 HRNRKGYRSQRGHSRGRNQNSRRPSRATWLSLFSSEESNLGANNYDDYRMDWLVPA 428


>X05006-1|CAA28659.1|  478|Homo sapiens protein ( Human S-protein
           gene, complete cds. ).
          Length = 478

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -1

Query: 219 HVQRMGRRCFRGHVRGR---GRGASCGPWLNFNDSTKTNI---NYSEFERAFVLTA 70
           H  R G R  RGH RGR    R  S   WL+   S ++N+   NY ++   +++ A
Sbjct: 373 HRNRKGYRSQRGHSRGRNQNSRRPSRAMWLSLFSSEESNLGANNYDDYRMDWLVPA 428


>X03168-1|CAA26933.1|  478|Homo sapiens protein ( Human mRNA for
           S-protein. ).
          Length = 478

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -1

Query: 219 HVQRMGRRCFRGHVRGR---GRGASCGPWLNFNDSTKTNI---NYSEFERAFVLTA 70
           H  R G R  RGH RGR    R  S   WL+   S ++N+   NY ++   +++ A
Sbjct: 373 HRNRKGYRSQRGHSRGRNQNSRRPSRAMWLSLFSSEESNLGANNYDDYRMDWLVPA 428


>BC005046-1|AAH05046.1|  478|Homo sapiens vitronectin protein.
          Length = 478

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -1

Query: 219 HVQRMGRRCFRGHVRGR---GRGASCGPWLNFNDSTKTNI---NYSEFERAFVLTA 70
           H  R G R  RGH RGR    R  S   WL+   S ++N+   NY ++   +++ A
Sbjct: 373 HRNRKGYRSQRGHSRGRNQNSRRPSRAMWLSLFSSEESNLGANNYDDYRMDWLVPA 428


>AL139287-7|CAI23176.1|  514|Homo sapiens cleavage and
           polyadenylation specific factor 3-like protein.
          Length = 514

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 222 GHVQRMGRRCFRGHVRGRGRGASCGPWLNFNDSTKTNINYSEFERAFVLTAAKY 61
           G  Q +GR C    + G+     CG  + FND     +    +    VL AA +
Sbjct: 25  GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDVDDELEIKAYYAGHVLGAAMF 78


>AK021939-1|BAB13943.1|  499|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to
           CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
           SUBUNIT. ).
          Length = 499

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 222 GHVQRMGRRCFRGHVRGRGRGASCGPWLNFNDSTKTNINYSEFERAFVLTAAKY 61
           G  Q +GR C    + G+     CG  + FND     +    +    VL AA +
Sbjct: 10  GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDVDDELEIKAYYAGHVLGAAMF 63


>BC110300-1|AAI10301.1|  335|Homo sapiens LARP2 protein protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -1

Query: 201 RRCFRGHVRGRGRGASCG---PWLNFNDS 124
           R  FRG  RGRGRG   G   P LNF+ S
Sbjct: 145 RGSFRGRGRGRGRGRGRGRGNPRLNFDYS 173


>BC021176-1|AAH21176.1|  166|Homo sapiens zinc finger, CCHC domain
           containing 13 protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
 Frame = -1

Query: 225 CGHVQRMGRRCFRGHVRGR-----GRGASCG 148
           CGH     R C RG   GR     GRG+ CG
Sbjct: 9   CGHSGHWARGCPRGGAGGRRGGGHGRGSQCG 39


>AK092764-1|BAC03970.1|  575|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35445 fis, clone SMINT2003551, weakly similar to
           Drosophila melanogaster La related protein (larp) mRNA.
           ).
          Length = 575

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -1

Query: 201 RRCFRGHVRGRGRGASCG---PWLNFNDS 124
           R  FRG  RGRGRG   G   P LNF+ S
Sbjct: 98  RGSFRGRGRGRGRGRGRGRGNPRLNFDYS 126


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,760,705
Number of Sequences: 237096
Number of extensions: 290278
Number of successful extensions: 959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 76,859,062
effective HSP length: 61
effective length of database: 62,396,206
effective search space used: 1372716532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)