Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c13
         (252 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15313-11|AAK68622.1|  208|Caenorhabditis elegans Hypothetical p...    26   4.1  
Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      25   9.4  
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    25   9.4  

>L15313-11|AAK68622.1|  208|Caenorhabditis elegans Hypothetical
           protein ZK353.9 protein.
          Length = 208

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 124 HKNKYKLFRIRTCVRFDSCQIRAN 53
           H  K +LF+ R  + FD C I A+
Sbjct: 98  HPAKIRLFKDREAMSFDDCSIEAD 121


>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 141 LNFNDSTKT--NINYSEFERAFV 79
           LNFND  ++  N NYSE+   FV
Sbjct: 442 LNFNDHIRSQFNYNYSEWRSLFV 464


>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
           protein B0198.3 protein.
          Length = 1050

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 115 KYKLFRIRTCVRFDSCQIR 59
           K KLF+ RTCVRF   + R
Sbjct: 60  KSKLFKKRTCVRFGEIKER 78


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 192 FRGHVRGRGRGAS 154
           FRG  RGRGRG S
Sbjct: 16  FRGRGRGRGRGTS 28


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 192 FRGHVRGRGRGAS 154
           FRG  RGRGRG S
Sbjct: 16  FRGRGRGRGRGTS 28


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 192 FRGHVRGRGRGAS 154
           FRG  RGRGRG S
Sbjct: 16  FRGRGRGRGRGTS 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,954,174
Number of Sequences: 27780
Number of extensions: 45790
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)