Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c12
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-7|CAC42273.1|  207|Caenorhabditis elegans Hypothetical pr...    35   0.053
Z81048-6|CAB02838.1|  197|Caenorhabditis elegans Hypothetical pr...    35   0.053
Y17255-1|CAB41945.1|  197|Caenorhabditis elegans SMN protein pro...    35   0.053
AF156887-1|AAF00192.1|  207|Caenorhabditis elegans survival moto...    35   0.053
Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC024206-6|AAF36048.2|  243|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81048-7|CAC42273.1|  207|Caenorhabditis elegans Hypothetical
           protein C41G7.1b protein.
          Length = 207

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +2

Query: 170 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 349
           DVWDD +L   YD++L+    E++K    +  T      K KG+      + K   WK G
Sbjct: 15  DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 60

Query: 350 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 484
             C A YE  G+  +Y A I  +    + E  V F+ Y    +V +  L
Sbjct: 61  GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109


>Z81048-6|CAB02838.1|  197|Caenorhabditis elegans Hypothetical
           protein C41G7.1a protein.
          Length = 197

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +2

Query: 170 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 349
           DVWDD +L   YD++L+    E++K    +  T      K KG+      + K   WK G
Sbjct: 5   DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 50

Query: 350 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 484
             C A YE  G+  +Y A I  +    + E  V F+ Y    +V +  L
Sbjct: 51  GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99


>Y17255-1|CAB41945.1|  197|Caenorhabditis elegans SMN protein
           protein.
          Length = 197

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +2

Query: 170 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 349
           DVWDD +L   YD++L+    E++K    +  T      K KG+      + K   WK G
Sbjct: 5   DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 50

Query: 350 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 484
             C A YE  G+  +Y A I  +    + E  V F+ Y    +V +  L
Sbjct: 51  GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99


>AF156887-1|AAF00192.1|  207|Caenorhabditis elegans survival motor
           neuron protein protein.
          Length = 207

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +2

Query: 170 DVWDDKKLNDAYDKALKMANAEVAKRVAMSTNTEHGNKGKLKGKSRPTSSNKKETEWKAG 349
           DVWDD +L   YD++L+    E++K    +  T      K KG+      + K   WK G
Sbjct: 15  DVWDDTELIKMYDESLQ----EISKNETSAKITSR----KFKGE------DGKMYTWKVG 60

Query: 350 MPCRAVYE--GDGLEYEAFILRV--ISDTECVVRFLGYENSELVPLNAL 484
             C A YE  G+  +Y A I  +    + E  V F+ Y    +V +  L
Sbjct: 61  GKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109


>Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical
           protein F55G7.2 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 602 TSQTAFDQDPETDFQSHRHHYPAALL 525
           T  T F       F SH+HH P  LL
Sbjct: 32  TLSTVFPNGKSIKFDSHKHHVPVILL 57


>AC024206-6|AAF36048.2|  243|Caenorhabditis elegans Hypothetical
           protein Y74C9A.1 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 28  KF*LKENLNTKKYLKEYLIYNPHQN 102
           +F LK   NTKK + EY  YN  QN
Sbjct: 92  RFILKYTSNTKKCVNEYFQYNHGQN 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,546,847
Number of Sequences: 27780
Number of extensions: 207855
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)