Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c09
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    30   0.29 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   1.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.7  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   3.6  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   4.8  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   6.3  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   6.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = +2

Query: 92  IHCTGHALTRTAWRFYMRG----TSRIPPMQFTKQELPDLAG*LEVFSLGSPSIQCTRKL 259
           I+C   A+T T  RFYMRG     S   P   T    P     L  F    P +Q     
Sbjct: 325 IYCV--AITSTGCRFYMRGGRGPISHYAPSNSTLSSTPPSTLQL-TFVRFPPPMQVENYA 381

Query: 260 NKKLY-*RPSWVQNLLANTLQIHNIWPVATSPRKLTSFLLLVSEPRFFS 403
           + + Y   P ++QN   +  Q      V T+P K +S   + +   FF+
Sbjct: 382 SSRNYPANPFFLQNQSTSQQQPERSSAVKTTPMKCSSLSNIYTSDLFFA 430


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 448  NSLEQKLRARIGE-AGYNTTVYTGTFGVTQLRDQN 549
            N L Q     +G+  G N  +Y GTFG   L+D+N
Sbjct: 898  NQLHQSAVRILGKMGGRNRQIYLGTFGFDFLQDEN 932


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 278 RPSWVQNLLANTLQ-IHNIWPVATSPRKLTSFLLLVSEPRFFSSMPPLSGNHLMRVTGTR 454
           RP +    L+ TL  +  I P+    R L     +        +   L  NH++R T   
Sbjct: 771 RPHYTVRTLSRTLSYVTEIAPIYGLRRSLYEGFCMSFLTLLDHTSESLLYNHVVRFTLGE 830

Query: 455 LNRNSVHALVKQ 490
           LNR+  +A++KQ
Sbjct: 831 LNRDQQNAILKQ 842


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 265 FVELACTLY*RRPQGKNLQLTS*VW*LLFGELHWGDS 155
           F EL   LY ++ QGK L+L+  +   LFG+++  DS
Sbjct: 767 FSELVKQLYSKKRQGKPLKLSGKMAHGLFGKVNTNDS 803


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 88  FYPLYWSCFDQ 120
           FYP+YW C+ Q
Sbjct: 365 FYPIYWVCYGQ 375


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 529  LRRRFPCKQ*YYILLHQCVHGVSVQASSS 443
            +R +FP     +ILL++C+   +VQ   S
Sbjct: 1179 VRNKFPSDDPAFILLYECLRSSNVQIDES 1207


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 40  YGNNTVIRVGFVINNFFYPLYWSC 111
           YG NT+ ++ +++  F + L+ SC
Sbjct: 60  YGLNTIGKIVYILQIFLFSLFGSC 83


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +1

Query: 136 LYAWYEQNPPNAVHQ--TGVTRPSWLAGGFFP 225
           L  W  ++P N V    TGV    W   G+FP
Sbjct: 386 LLHWLYKDPQNNVQGPFTGVDMHQWYRAGYFP 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,170
Number of Sequences: 5004
Number of extensions: 60394
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)