Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c09
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322     31   0.69 
07_03_0275 - 16160467-16160555,16160695-16160764,16160860-161609...    29   2.8  
05_01_0219 + 1638318-1638553,1639186-1639336,1639504-1639611,163...    29   2.8  
05_03_0259 - 11161447-11161706,11161764-11164266                       29   3.7  
08_02_0349 - 16077063-16077824,16077891-16078102,16078142-160782...    28   4.9  
04_04_0210 + 23616407-23618851                                         28   4.9  
08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220           27   8.5  

>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
          Length = 665

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 58  IRVGFVINNFFYPLYWSCFDQNRLEVLYAWYEQNPPNAVHQTGVTRP 198
           +R+  V+N F     W   D+N LE +      NPPN  H  G   P
Sbjct: 106 LRLAMVLNLFL----WDRNDKNHLEAIGQGTGNNPPNPEHSVGAISP 148


>07_03_0275 -
           16160467-16160555,16160695-16160764,16160860-16160940,
           16161160-16161252,16161430-16161510,16161605-16161694,
           16161812-16161905,16162063-16162131,16162205-16162275,
           16162545-16162628,16162755-16162847,16162995-16163102,
           16163297-16163447,16164026-16164297,16165213-16165218,
           16165389-16165613
          Length = 558

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 504 SSIISCFTNACTEFLFKRVPVTRIKWLPLRGG-IDEKKRGSLTSSKNEVSFRGEVATGHM 328
           S + S +TN   E L ++VPVT +K  P R G + +     L  SKN +  RG    G +
Sbjct: 462 SDMTSDWTNEEREMLRRKVPVTGLK-TPFRDGYVRDLAEEILQLSKNGLERRGYKEVGFL 520

Query: 327 L*ICNVFAS 301
             +  V +S
Sbjct: 521 REVDAVISS 529


>05_01_0219 +
           1638318-1638553,1639186-1639336,1639504-1639611,
           1639755-1639847,1639973-1640056,1640314-1640384,
           1640461-1640529,1640686-1640779,1640897-1640986,
           1641082-1641162,1641341-1641433,1641650-1641730,
           1641815-1641884,1642022-1642110
          Length = 469

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 504 SSIISCFTNACTEFLFKRVPVTRIKWLPLRGG-IDEKKRGSLTSSKNEVSFRGEVATGHM 328
           S + S +TN   E L ++VPVT +K  P R G + +     L  SKN +  RG    G +
Sbjct: 373 SDMTSDWTNEEREMLRRKVPVTGLK-TPFRDGYVRDLAEEILQLSKNGLERRGYKEVGFL 431

Query: 327 L*ICNVFAS 301
             +  V +S
Sbjct: 432 REVDAVISS 440


>05_03_0259 - 11161447-11161706,11161764-11164266
          Length = 920

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 206 NQLGLVTPVW*TALGGFCSYHAYKTSRRFW 117
           N L   T  + T L GFCS HA   + R W
Sbjct: 423 NGLAATTLTYNTLLKGFCSLHAIDDALRLW 452


>08_02_0349 -
           16077063-16077824,16077891-16078102,16078142-16078204,
           16078439-16078865,16078870-16078919,16079006-16079360
          Length = 622

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +2

Query: 308 NTLQIHNIWPVATSPRKLTSFLLLVSEPRFFSSMPPLSGNHLMRVTGTRLNRNSVHALV 484
           +T  +   +P+    R  +S+   +++P F++ + P+S NHL    G      +V   V
Sbjct: 108 STAFLSKFFPMGVCGRLSSSWDERLADPNFYNGLTPVSRNHLDAAAGGTFFSKTVRGAV 166


>04_04_0210 + 23616407-23618851
          Length = 814

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 341 ATSPR--KLTSFLLLVSEPRFFSSMPPLSGNHLMRV 442
           AT PR   L + L L+  PRF S MP  +GN   R+
Sbjct: 771 ATPPRVVALVAGLYLLRHPRFRSRMPSAAGNFFKRL 806


>08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220
          Length = 629

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = +1

Query: 127 LEVLYAWY-----EQNPPNAVHQTGVTRPSWLAG 213
           L  L++WY     +QNPP AV  +  T  S LAG
Sbjct: 261 LHQLHSWYFNSSFQQNPPPAVQHSPTTSGSGLAG 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,369,515
Number of Sequences: 37544
Number of extensions: 417533
Number of successful extensions: 969
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)