Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c08
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    69   7e-13
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    32   0.077
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   3.8  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   8.9  

>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 68.5 bits (160), Expect = 7e-13
 Identities = 32/75 (42%), Positives = 48/75 (64%)
 Frame = +2

Query: 356 KMEMDKENIVQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLXSLALGGVGEAIL 535
           K+E  K + +QA+V+ D++N  F PLT +KP   L +A  PLI+Y    LAL GV E  +
Sbjct: 10  KLEKPK-HALQAIVLSDSYNYRFRPLTLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYV 68

Query: 536 FCCQNGQXIKEHVQK 580
           FCC +   I+E+++K
Sbjct: 69  FCCAHAGQIREYIEK 83


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 31.9 bits (69), Expect = 0.077
 Identities = 16/67 (23%), Positives = 35/67 (52%)
 Frame = +2

Query: 383 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLXSLALGGVGEAILFCCQNGQXI 562
           ++A++++  F +   PLT   P   +E    P+I + + +LA  GV + +L      + +
Sbjct: 1   MKALILVGGFGTRLRPLTLTLPKPLVEFGNKPMILHQVEALAAAGVTDIVLAVNYRPEIM 60

Query: 563 KEHVQKH 583
            E ++K+
Sbjct: 61  VEALKKY 67


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
 Frame = +3

Query: 111 CLYDWTEYTELKVLQNDF----GEQVH 179
           CLY W  Y EL + +N F    G+ VH
Sbjct: 556 CLYVWDNYVELSISKNIFFIGGGKAVH 582


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 249 SYNRICSIEKAL*LIS*GNIVPACELVPQNHSV 151
           +++R C +EK   L S  NI+  C+L   +++V
Sbjct: 857 AFHRSCMLEKTYKLASEKNILKECQLCGPSYAV 889


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,177
Number of Sequences: 5004
Number of extensions: 41293
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)