Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c08
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    62   3e-10
08_01_0849 - 8336065-8336736,8336812-8337051,8337143-8337205,833...    29   3.0  
01_06_1334 + 36389179-36389289,36389777-36389839,36389930-363901...    29   3.0  
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888...    28   6.9  
09_04_0625 - 19044775-19045078,19045178-19045382,19045534-190461...    27   9.2  

>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/66 (40%), Positives = 40/66 (60%)
 Frame = +2

Query: 383 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLXSLALGGVGEAILFCCQNGQXI 562
           +QAV++ D+F   F P+T  +P   L +  VP+I+Y L  L   GV E  +FCC + Q +
Sbjct: 26  LQAVLLADSFTLKFRPITLERPKVLLPLVNVPMIEYTLSWLESAGVEECFVFCCAHAQQV 85

Query: 563 KEHVQK 580
           KEH+ K
Sbjct: 86  KEHLGK 91


>08_01_0849 -
           8336065-8336736,8336812-8337051,8337143-8337205,
           8337686-8337796
          Length = 361

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +2

Query: 383 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLXSLALGGVGEAIL 535
           ++A++++  F +   PLT + P   ++ A  P+I + + +L   GV E +L
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVL 51


>01_06_1334 +
           36389179-36389289,36389777-36389839,36389930-36390169,
           36390245-36390916
          Length = 361

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +2

Query: 383 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLXSLALGGVGEAIL 535
           ++A++++  F +   PLT + P   ++ A  P+I + + +L   GV E +L
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVL 51


>03_02_0495 -
           8879612-8880283,8880369-8880608,8880713-8880775,
           8881510-8881620
          Length = 361

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +2

Query: 383 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLXSLALGGVGEAIL 535
           ++A++++  F +   PLT + P   ++    P+I + + +L   GV E +L
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVL 51


>09_04_0625 -
           19044775-19045078,19045178-19045382,19045534-19046168,
           19046334-19047391
          Length = 733

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 277 VSXIYENAHSWAQCKKVXK 333
           V+ +  NAH WAQCK V K
Sbjct: 410 VAAMILNAHFWAQCKHVVK 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,313
Number of Sequences: 37544
Number of extensions: 237175
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)