Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c08
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    33   0.17 
AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z46794-5|CAA86784.1|  381|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 356 KMEMDKENIVQAVVIMDTFNSNFSPLTDNKP-MGFLEVAGVPLIDYVL 496
           K    +E+ + A+VI+D F+  F+P  ++ P  G + +  VP I++ L
Sbjct: 10  KTPKKEEHPLVAIVILDAFDQRFAPTHESYPCFGTIPICNVPAINFAL 57


>AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1b protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 416 SNFSPLTDNKPMGFLEVAGVPLIDYVLXSLA-LGGVGEAIL 535
           + F PL+   P     +AGVPLI++ +  L  L G+ E +L
Sbjct: 9   TRFRPLSLQLPKPLFPIAGVPLIEHHIDQLCQLSGLSEILL 49


>AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1a protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 416 SNFSPLTDNKPMGFLEVAGVPLIDYVLXSLA-LGGVGEAIL 535
           + F PL+   P     +AGVPLI++ +  L  L G+ E +L
Sbjct: 16  TRFRPLSLQLPKPLFPIAGVPLIEHHIDQLCQLSGLSEILL 56


>Z46794-5|CAA86784.1|  381|Caenorhabditis elegans Hypothetical
           protein R06F6.5b protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 513 PKARDXRT*SIRGTPATSRKPIGLLS 436
           P A D RT  ++GTP+  + P GLL+
Sbjct: 347 PLAADQRTNILQGTPSVRKAPDGLLN 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,498,997
Number of Sequences: 27780
Number of extensions: 234139
Number of successful extensions: 448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)