Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18c06
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    33   0.11 
U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical pr...    31   0.44 
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    30   1.0  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical ...    27   7.1  

>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 459 MERPVKARITPYLSRK-PSRRFPNLEIPSP 545
           +ERPV AR TPY+ R  P+R  P +E P P
Sbjct: 174 IERPVPARPTPYIERPVPARPAPYIERPEP 203



 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 459 MERPVKARITPYLSR-KPSRRFPNLEIPSP 545
           +ERPV AR  PY+ R +P+R  P +E P P
Sbjct: 186 IERPVPARPAPYIERPEPARPAPYIERPVP 215



 Score = 30.7 bits (66), Expect = 0.76
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query: 459 MERPVKARITPYLSRKPSRRFPNLE----IPSPMEKPSRS 566
           +ERPV AR  PY+   P+R  P +E     P P  +P R+
Sbjct: 210 IERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQPPRT 249


>U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical
           protein F57F4.1 protein.
          Length = 461

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 526 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF 410
           +GK   GFL R  + LA+T   + C  RV V  +D ++F
Sbjct: 321 YGKIFGGFLMRKALELAYTNAKLYCKGRVAVRSMDHIEF 359


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -2

Query: 526 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 392
           +GK   GFL R  + LA T   + C  RV +  +D ++F     + H+LH
Sbjct: 301 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 350


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -2

Query: 526 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 392
           +GK   GFL R  + LA T   + C  RV +  +D ++F     + H+LH
Sbjct: 256 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 305


>Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical
           protein R11G10.2 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 103 VKSLSFQVFNGILLIARFFLHNARCNN 23
           ++S++    +G L+I   FLHNA CN+
Sbjct: 303 IQSINLDTCDGSLVICVKFLHNADCNH 329


>AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical
           protein F39G3.2 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 471 VKARITPYLSRKPSRRFPNLEIPS 542
           ++ R  P   R P+R FPNL++PS
Sbjct: 223 LRLRPWPSFGRLPTRLFPNLKLPS 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,230
Number of Sequences: 27780
Number of extensions: 220484
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)