Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b20
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   2.7  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subu...    26   4.7  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   6.2  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   6.2  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    25   8.1  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   8.1  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   8.1  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 281 LKMHALGITGHRFVQSNICICIL*RLNPRWDSLEE*YSKKTLIGL 415
           L M +  I+  +FV+S  C+ +L  +NP W  + + +SK   +GL
Sbjct: 467 LVMKSWDISEDQFVES--CLGVL-EVNPEWSGIVKTWSKSHTLGL 508


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 381 SNESHLGFRRYSMQMQMF-D*TKRWPVIPKACIF 283
           S  SHL  +  +  +Q+F + +KRW + P+ CI+
Sbjct: 109 SKYSHLQEKNRTSFLQVFKERSKRWFLFPRLCIY 142


>SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subunit
           Apc13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 181 IRNVDLHDDLDLESIINRMMSISRELLSKNNLSIEDARFGYHWPPFRSVK 330
           +R+     DL+LE ++N    I     ++   +IED    +   PF+SVK
Sbjct: 64  LRHEPAWKDLELEDLVNAFAFIQGSSNAEGKNTIED---NFETDPFKSVK 110


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 505 YVCLVEFR*NNLFRLQLHFTLK*RRHIPAKQTNKSFF 395
           +VC  E + + + RLQ  F  K      A+Q NK+ F
Sbjct: 456 FVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKALF 492


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 377 MNPISDSGAIVCRCKCLTERNGGQ*YPKRASS 282
           ++ ++D+ A +CR  C   RNG    PK   S
Sbjct: 33  IDEVNDAAAALCRVYCYLSRNGLLKRPKEDDS 64


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +1

Query: 184 RNVDLHDDLDLESIINR---MMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLH 339
           R V   D +  E   N+   + SI R +  K+N+ +E       WP +R   H +
Sbjct: 88  RRVSPEDVVKCEERFNKSKAVHSIMRHIAEKHNVPLETMYTTIGWPLYRKYGHAY 142


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 315 RWPVIPKACIFNTQIV 268
           RWP +P+A I+N+  +
Sbjct: 241 RWPTVPQAVIYNSPYI 256


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 432 DIFRRNKPIRVFFEYHSSNESHL 364
           + F   KPI  F E+ SS+  HL
Sbjct: 250 EYFTPRKPIDTFLEHRSSSHDHL 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,337
Number of Sequences: 5004
Number of extensions: 50481
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)