Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b20
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286...    55   5e-08
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683...    32   0.39 
10_08_0806 + 20709599-20710597                                         29   3.6  
03_06_0040 + 31240164-31241102,31241280-31241897                       27   8.3  

>04_04_0631 -
           26728144-26728228,26728321-26728398,26728584-26728650,
           26728748-26728824,26729961-26730012,26730248-26730294,
           26730457-26730527
          Length = 158

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 20/44 (45%), Positives = 34/44 (77%)
 Frame = +1

Query: 223 IINRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIA 354
           +++ M+++ R+LL+++  + E+ RFG+H PPF SV HLHLH +A
Sbjct: 82  LVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVDHLHLHCLA 125


>05_06_0060 -
           25266735-25267210,25267323-25267569,25267650-25268345,
           25268457-25268709,25268786-25269261,25270760-25270909
          Length = 765

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 238 MSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIAPESEMGFIGRVIFKKNSYWFV 417
           M +SR+ LS NN+S +D  FG     F+ V  +    +     +G+   ++   + YWF 
Sbjct: 527 MPVSRDTLSPNNVSFDDCHFGTQC--FQQVTKVKSRIVLKILRLGY-NVLLSDVDVYWFH 583

Query: 418 SP 423
           +P
Sbjct: 584 NP 585


>10_08_0806 + 20709599-20710597
          Length = 332

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -1

Query: 384 SSNESHLGFRRYSMQMQMFD*TKRWPVIPKACIFNTQIVFRQQLSRYGHHSVNDG-L*VQ 208
           SS+ S  G RR  M   + +  + W V+    +      +   L   G   + DG + V 
Sbjct: 79  SSSSSQGGGRRRPMSRALIEQHRPWDVVDNMALIIIDQTYAAALGIPGRREMGDGSVEVS 138

Query: 207 VVMEVDVPDEP 175
             ++ D PD P
Sbjct: 139 SAVDADDPDSP 149


>03_06_0040 + 31240164-31241102,31241280-31241897
          Length = 518

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 229 NRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHL 342
           NR    S+ L + N  S+  A +G HW   R +  +HL
Sbjct: 98  NRPRFPSQMLATFNGTSLGSANYGPHWRNLRRIATVHL 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,159,302
Number of Sequences: 37544
Number of extensions: 292137
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)