Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b20
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    46   1e-05
U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +1

Query: 214 LESIINRMMSISRELLSKNNLS--IEDA-RFGYHWPPFRSVKHLHLHTIAPESEMGFIGR 384
           LE +      + RE L K   +  +ED  R G+H PP  SV HLH+H I P S+MG I R
Sbjct: 67  LEEMEKTGRELLREHLKKKGEADTVEDMLRIGFHLPPLLSVHHLHMHIIYPISDMGLISR 126


>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
           protein C12D5.2 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 330 TFASAYYSA*IRDGIHWKSDIQKKLLLVCFAGICRLYFNVKCNWSLNKLFY 482
           TFA  +Y+  +R G+H+   +  K++ +C   I  L  N +      + FY
Sbjct: 267 TFAMVFYAL-MRVGVHYIEYLLLKMIFICNPAIPNLSSNAQYKLEKGRSFY 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,000
Number of Sequences: 27780
Number of extensions: 274793
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)