Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b19
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical pr...    34   0.088
AF106579-7|AAC78199.2|  391|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    27   7.6  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    27   7.6  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    27   7.6  

>Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical
           protein F57G4.8 protein.
          Length = 401

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 23/92 (25%), Positives = 42/92 (45%)
 Frame = +1

Query: 178 VDHPQIALAAITSYKKQIEISEFINFLLEALERNAVWLNTLVGNQNNFKCALMVGAGPNR 357
           +D     L+  T       +S FI  + E   R+A+ +  +   + +FK A ++   PN+
Sbjct: 278 MDDETYKLSKSTGIDNFFHLSHFIISVQEFTTRDAMKIKNIFMKEPSFKYAKILAEIPNQ 337

Query: 358 FQIQEIIYPARNNNVKLEVELKDSEDHDKIAV 453
            +I  + YPA +    L   ++   D DK A+
Sbjct: 338 MEILRVFYPAYSE--PLPPGVRYETDGDKFAL 367


>AF106579-7|AAC78199.2|  391|Caenorhabditis elegans Hypothetical
           protein F54E2.1 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
 Frame = +1

Query: 229 IEISEFINFLLEALERNAVWLNTLVGNQNNFKC------ALMVGAG-PNRFQIQEIIYPA 387
           I IS  + F   +L +  + LNTL+GN    K       +L V A   + F +  I    
Sbjct: 3   ISISLLLTFCKLSLAQQVIPLNTLIGNNFENKIDVTPPFSLYVSAQMDSDFNLNNIYVKT 62

Query: 388 RNNNVKLEVELKDSEDHDKIAVAAVLQLSNADI--TNL 495
            +N +K   +L+ S  H +    +  Q ++  +  TNL
Sbjct: 63  MDNQIKSLKDLRHSRQHAESGPISPFQATSQTLITTNL 100


>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 130 LKKSSTKRPRELGEKVVDHPQIALAAI 210
           L++S    P EL + +V+HPQIA A +
Sbjct: 150 LQESLKNNPSELHKFLVEHPQIAYAVL 176


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 589  SIRRNLLPSICLLEDRLSTSNSRTGGS*CTLK 494
            ++ R++L +IC L   +   +SR GG  C LK
Sbjct: 1206 NVDRHILSAICSLHSTVKLFDSRVGGWTCELK 1237


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 589  SIRRNLLPSICLLEDRLSTSNSRTGGS*CTLK 494
            ++ R++L +IC L   +   +SR GG  C LK
Sbjct: 1206 NVDRHILSAICSLHSTVKLFDSRVGGWTCELK 1237


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 448 AVAAVLQLSNADITNLLKYIKTRLFENSMLKDDLLKGKSMGVGFALLR 591
           ++A++   SN+D++ LLK +    F +   +DDL K     +G  L++
Sbjct: 717 SLASIGSYSNSDVSQLLKELIDVCFCDEDTRDDLYKCGGEAIGQILIK 764


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,067
Number of Sequences: 27780
Number of extensions: 265009
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)