Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b14
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    26   3.5  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   4.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.1  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   8.1  

>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 299 LLGTYIISCCSFQDFYFSLKTILIFSSDDYITLIRCLHS 183
           LLG  +    +F +  FSLKT+L+  +D  I+ I  +HS
Sbjct: 86  LLGPSLEDLFNFCNRKFSLKTVLLL-ADQLISRIEFIHS 123


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 320 FSQHAAYLLGTYIISCCSFQDFYFSLKTILIFSSD 216
           +   +AY+ GT      + +D+Y  L+ +L  SSD
Sbjct: 250 YENDSAYIAGTPSFHIPTIRDYYIDLEFLLSASSD 284


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 289  VPNKYAAC*EKQPVFVRNFITSKLIQIF 372
            +PN Y  C  K P F R+    +LI  F
Sbjct: 2161 LPNFYRQCPSKIPAFYRSLFRRRLIMWF 2188


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 359 SFEVIKFLTNTGCFSQHAA--YLLGTYIISCCSFQDFYFSLKTILIFSSDDYITLIRCLH 186
           SF  I+F+   G F    +  ++ GTY+    +  +   S    ++    D +T+  C  
Sbjct: 387 SFSTIQFVA-LGVFHSKISDPHIGGTYMTILNTLSNLGGSWPQYVMLRMADLLTVSSCST 445

Query: 185 SPHLT 171
           +PHLT
Sbjct: 446 APHLT 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,105
Number of Sequences: 5004
Number of extensions: 34421
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)