Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18b13
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 29 0.35
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc... 27 1.4
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 1.8
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 25 5.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 7.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 7.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 7.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 7.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 7.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 7.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 7.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 7.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 24 7.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 7.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 7.4
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 24 9.8
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 24 9.8
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 24 9.8
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 28.7 bits (61), Expect = 0.35
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +1
Query: 232 PKTPLRRSSCCDSKEFDSRNRNRNH----SPPSPKQKLPTAPLSFGFNP 366
PKTPLRRS + + RN S SP+ L T + GF P
Sbjct: 252 PKTPLRRSFSKSKVRNSNSTKRRNFISLISMISPRPNLSTHHFNLGFQP 300
>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +1
Query: 157 CEESPTCYPCLPHCPQSMVYCCDTRPKTP--LRRSSC 261
C YP L P +YCCD P+ +++ SC
Sbjct: 64 CGVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSC 100
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 1.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 226 TRPKTPLRRSSCCDSKEFDSRNRNRNHSPPSPKQKLP 336
+R ++P RS S ++D R+ RNH PSP P
Sbjct: 145 SRSRSPDGRSR---SPDYDRRSPKRNHRSPSPVSFAP 178
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 66 LSRFKICNYILHNLLFTT 13
L RFK C Y+ H L+ T
Sbjct: 6 LKRFKGCEYLTHRLVLAT 23
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 289 NRNRNHSPPSPKQKLP 336
N++RNH P P Q +P
Sbjct: 963 NKSRNHKPYGPLQPIP 978
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 304 HSPPSPKQKLPTAPLSFGFN 363
HS PK LP++P F N
Sbjct: 267 HSSKMPKHSLPSSPTPFNSN 286
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 280 DSRNRNRNHSPPSPKQKLPTAP 345
+S N N+N S SP+++LPT+P
Sbjct: 62 NSSNVNKNSS--SPERELPTSP 81
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 23.8 bits (49), Expect = 9.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = +1
Query: 217 CCDTRPKTPLRRSSCCDSKE 276
CC + +P + SCC ++
Sbjct: 225 CCSKKDSSPSEKPSCCSQEK 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,914
Number of Sequences: 5004
Number of extensions: 28857
Number of successful extensions: 90
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -