Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b13
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0821 - 27960414-27961253                                         29   1.4  
01_05_0135 + 18460416-18460482,18460614-18460942                       29   1.8  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    28   2.4  
08_01_0329 - 2962018-2962695                                           27   4.1  
12_02_0643 - 21461123-21461902                                         26   9.6  

>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 128 FLLHLRIQPDVRNHPRATRACHTAHN 205
           FLLH R+ P    HPRA RA    H+
Sbjct: 50  FLLHRRVVPLPSPHPRALRAVSALHS 75


>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 86  IAILKTAVRSL*PRFLLHLRIQPDVRNHPRATRACHTAHNLWFTVVT 226
           I+  KT      PR LLHL + P  RN    TR C    +L    ++
Sbjct: 63  ISAAKTGRTPTAPRTLLHLPLPPSHRNRCAITRICQEICHLCLETIS 109


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 152 VGYEDVTRTGATANGPQSSG*QYCIFINFYPVLKFVI 42
           V  EDV R  A  N     G + C+F+  Y   KF I
Sbjct: 448 VNTEDVIRARANRNNNDDPGNRLCVFVRDYYCYKFQI 484


>08_01_0329 - 2962018-2962695
          Length = 225

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 298 RNHSPPSPKQKLPTAP 345
           R+H PP PK K P AP
Sbjct: 81  RSHRPPDPKPKQPDAP 96


>12_02_0643 - 21461123-21461902
          Length = 259

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 235 KTPLRRSSCCDSKEFDSRNRNRNHSPPSPKQKLPTAP 345
           + P  R+   + +E  S  R R  +PP P+ + PT P
Sbjct: 197 RRPPSRTPPPERRESPSPLRGRPRTPPPPRPRPPTTP 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,044
Number of Sequences: 37544
Number of extensions: 193568
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)