Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b13
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024771-10|AAK70664.1|  433|Caenorhabditis elegans Hypothetical...    31   0.30 
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    31   0.40 
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    30   0.52 
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    30   0.69 
Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    27   4.9  
Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>AC024771-10|AAK70664.1|  433|Caenorhabditis elegans Hypothetical
           protein Y40B10A.9 protein.
          Length = 433

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 86  YCIFINFYPVLK--FVIIFYIICCSRRI 9
           Y IFI  + +L   FVIIFY IC +RR+
Sbjct: 381 YLIFIGIWVLLMVLFVIIFYCICVTRRV 408


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +1

Query: 100  DCGPFAVAPVLVTSSYPTRCEESPTCYP-CLPH-CPQSMVYCCDTRPKTPLRRSSCCDSK 273
            +CG   ++ V ++  Y   C  S T    C P  CP     CC  R K  + R+  C S 
Sbjct: 828  NCGVTTLSRVCLSQDYNCACSGSTTKQSECAPAPCPFPRTSCCGARKKVIVGRTFECSSA 887

Query: 274  E 276
            +
Sbjct: 888  D 888


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
 Frame = +1

Query: 85  YCYPED--CGPFAVAPVLVTSSYPTRCEESPTCYP---CLPHCPQSMVYCCDTRPKTPLR 249
           Y  P++  C     APV  + S     ++     P   C P C QS    C + P     
Sbjct: 46  YTQPQETSCSCQNTAPVQTSCSCAQPVQQQTYLVPTSQCAPACQQSCQIHCHSAPFVQEC 105

Query: 250 RSSCCDSKEFDSRNRNRNHSPPSPKQKLP 336
           +SSC  S +  S      ++PP+P Q +P
Sbjct: 106 QSSCQQSCQTTS-----CYTPPAPAQCMP 129


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 229 RPKTPLRRSSCCDSKEFDSRNRNRNHSPPSPKQKLPTAPLSFGFNP 366
           R ++P R  S      F  RN  R HSPP P Q+ P    S  + P
Sbjct: 126 RSRSPPRYHSGPREDRFSDRNPPREHSPP-PPQRFPARERSPAYIP 170


>Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical
           protein C14H10.3 protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = +3

Query: 309 PPLAKTET---PHRPLVVRI--QPTSPLQTAV 389
           PP+ K ET   PH P   +I  +PTS  +TAV
Sbjct: 782 PPITKNETPQIPHEPFATKIDEEPTSESETAV 813


>AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical
           protein C41D11.3 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 LVTSSYPTRCEESPTCYPCLP-HCPQSMVYCCDTRPKTPLRRSSCCDSKEFDSRNRNRNH 306
           L+ ++ P + EESPT YP  P +  +S     D R  T     S   S     R +   H
Sbjct: 396 LLKNAIPIKLEESPTKYPVTPVYTRRSRSSLSDIRESTSETTGSITPSTSLSERIKAMQH 455


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
 Frame = +1

Query: 82  QYCYPEDC-GPFAVAPVLVTSSYPTRCEES-----PTCYPCLPHCPQS-MVYCCDTRP 234
           Q C    C  P   APV    S    CE+S     P    C+P C Q     C  T+P
Sbjct: 111 QSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQCVQTQP 168


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +1

Query: 115 AVAPVLVTSSYPTRCEES---PTCYP-CLPHCPQSMVYCCDTRPKTPLRRSSCCDS 270
           AV     T++ P+ C ++   P C P CLP C Q +       P  P   S C  S
Sbjct: 214 AVTCSTCTNNCPSICSQANCIPQCMPRCLPTCIQQIQISVPLPPPAPRCDSMCMPS 269


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 103 CGPFAVAPVLVTSSYPTRCEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCC 264
           CGP   +PV      P     +P C P  P  P  +V CC    + P+  + CC
Sbjct: 100 CGP---SPVPAPCCPPPPAPAAPCCPPPPPPTPSPLV-CC---KQAPVPENPCC 146


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 157 CEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCC 264
           C  +  C P +P CPQ  + CC   P   L   +CC
Sbjct: 653 CLPTIPCCPPIPCCPQPKI-CCQPAP-VCLPPPTCC 686


>Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical
           protein K08E7.5d protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 157 CEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCC 264
           C  +  C P +P CPQ  + CC   P   L   +CC
Sbjct: 298 CLPTIPCCPPIPCCPQPKI-CCQPAP-VCLPPPTCC 331


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 157 CEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCC 264
           C  +  C P +P CPQ  + CC   P   L   +CC
Sbjct: 250 CLPTIPCCPPIPCCPQPKI-CCQPAP-VCLPPPTCC 283


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
            K08E7.5a protein.
          Length = 1221

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 157  CEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCC 264
            C  +  C P +P CPQ  + CC   P   L   +CC
Sbjct: 978  CLPTIPCCPPIPCCPQPKI-CCQPAP-VCLPPPTCC 1011


>Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical
           protein F53B7.4 protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 139 SSYPT-RCEESPTCYPCLPHCPQSMVYC 219
           SSY + RC E   CY C  +C  S + C
Sbjct: 131 SSYESIRCPEYSLCYNCSKYCFSSSLEC 158


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
           protein C05C9.3 protein.
          Length = 1225

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 211 VYCCDTRPKTPLRRSSCCDSKEFDSRNRNRNHSP 312
           V  CD     P +R+  CD   +    RN N +P
Sbjct: 502 VLSCDECWSIPTQRTISCDDDGYSESTRNNNKAP 535


>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 208 MVYCCDTRP-KTPLRRSSCCDSKEFDSRNRNRNHSPPSPKQKL 333
           MV   DT P +TPL  +   +  + + +   R   PPSP++ L
Sbjct: 349 MVSSLDTHPIRTPLYENPFYEWNQENRKRNERAQCPPSPQRTL 391


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
            E01G6.1 protein.
          Length = 1391

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 145  YPTRCEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCC 264
            Y +R    PTC+  L  CP +  Y C   P+   + S CC
Sbjct: 949  YISRDGFPPTCHMQLSPCPTTAPYVCIYSPEK--QDSYCC 986


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,023,979
Number of Sequences: 27780
Number of extensions: 179116
Number of successful extensions: 701
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)