Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b13
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   0.96 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   1.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   1.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   1.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   1.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   1.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.8  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   6.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   6.8  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   6.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   6.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   9.0  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 166 IPHIWLDTKM*QEPGLQRTDRSLQD 92
           I H++ D ++  EP   RTD S  D
Sbjct: 225 INHMFEDARLLDEPSANRTDLSKDD 249


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 247 RRSSCCDSKEFDSRNRNRN 303
           +R+S C S+  DSR+ +RN
Sbjct: 225 QRTSSCHSRYEDSRHEDRN 243


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 247 RRSSCCDSKEFDSRNRNRN 303
           +R+S C S+  DSR+ +RN
Sbjct: 225 QRTSSCHSRYEDSRHEDRN 243


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 247 RRSSCCDSKEFDSRNRNRN 303
           +R+S C S+  DSR+ +RN
Sbjct: 225 QRTSSCHSRYEDSRHEDRN 243


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 247 RRSSCCDSKEFDSRNRNRN 303
           +R+S C S+  DSR+ +RN
Sbjct: 225 QRTSSCHSRYEDSRHEDRN 243


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 247 RRSSCCDSKEFDSRNRNRN 303
           +R+S C S+  DSR+ +RN
Sbjct: 225 QRTSSCHSRYEDSRHEDRN 243


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 247 RRSSCCDSKEFDSRNRNRN 303
           +R+S C S+  DSR+ +RN
Sbjct: 225 QRTSSCHSRYEDSRHEDRN 243


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 288 TAIKFLAITTT*PPQWCLRPS 226
           TA     +T   PP+W L P+
Sbjct: 666 TASHSTTLTVNVPPRWILEPT 686


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 67  KFIKMQYCYPEDCGPFAVAPVLVTSSY 147
           K +KM  C P D  P  V    ++  Y
Sbjct: 226 KVLKMYACCPNDTYPMIVYEFSISRHY 252


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +1

Query: 169 PTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCCDSKEFDSRNRNRNHSPPSPK 324
           P+ YP     PQS       RP+    R+S     E+   N     S PSP+
Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVSPDRTS---PMEYRLYNPALIQSQPSPQ 441


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 244 LRRSSCCDSKEFDSRNRNRNHS 309
           +R S C +    D+ + N NH+
Sbjct: 409 IRNSRCANFDNQDNNHYNHNHN 430


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 277 FDSRNRNRNHSPPSPKQKLPTAP 345
           F  +  N  H PP PK  +   P
Sbjct: 60  FQLKPYNPEHKPPGPKDLVYLEP 82


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 247 RRSSCCDSKEFDSRNRNRN 303
           +R+S C S+  D R+ +RN
Sbjct: 225 QRTSSCHSRYEDLRHEDRN 243


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 277 FDSRNRNRNHSPPSPKQKLPTAP 345
           F  +  N  H PP PK  +   P
Sbjct: 61  FQLKPYNPEHKPPGPKDLVYLEP 83


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 160 EESPTCYPCLPH 195
           E S T  PCLPH
Sbjct: 99  ECSKTSNPCLPH 110


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 247 RRSSCCDSKEFDSRNRNRN 303
           +R+S C S+  DSR+ + N
Sbjct: 225 QRTSSCHSRYEDSRHEDGN 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,353
Number of Sequences: 438
Number of extensions: 2297
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)