Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b11
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   1.4  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   2.4  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   5.5  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   7.3  

>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 53  WWYLQFLFFSIKNSRSKARSLQRIET*LLKTIDFNNLDQKTS 178
           WW+  FLFFS+ N           +    +T+D+    QK S
Sbjct: 296 WWHAPFLFFSVLNVEDFTNFKMVCDESKAQTVDWEFEGQKCS 337


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 345 LTLNAKNIPYDLVFINLDQK-PEWIFNFSPKGTVP 446
           L L  +N   D + IN D   P W   FSPK T+P
Sbjct: 91  LHLENQNSIVDSIHINADTVLPVWSEAFSPKSTLP 125


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 357 AKNIPYDLVFINLDQKP 407
           AK + YD +++NL +KP
Sbjct: 3   AKTVQYDNIYLNLSEKP 19


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   HLIYSRVHSIHFLNSYWWYLQFLFFSIK 88
           HL++  V+   +LN +W Y    +F ++
Sbjct: 37  HLLFLLVYVTRYLNLFWRYKSLYYFLMR 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,226
Number of Sequences: 5004
Number of extensions: 42427
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)