Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b11
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    25   0.66 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.2  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   8.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.2  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 80  RKTRIVDTTSTSSRNEL 30
           RKTRI+D    +S NEL
Sbjct: 74  RKTRIIDVVYNASNNEL 90


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 521 WILFIKINIYNVAVKECLTRFIFQ 450
           W+ F  +NI     K C++   FQ
Sbjct: 285 WVPFFCVNIVTSYCKTCISGRAFQ 308


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 262 KPEMFCPHIVENFAFLL*DFVLTPKG 339
           K +++C  I++NF  L  + V  P+G
Sbjct: 58  KVQLYCECILKNFNILDKNNVFKPQG 83


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 531 EESLDTFHQDKH 496
           E +LD FH DK+
Sbjct: 207 EHTLDRFHNDKY 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,865
Number of Sequences: 438
Number of extensions: 2853
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)