Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b06
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0255 - 13522303-13522337,13524027-13524126,13524247-135244...    77   1e-14
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072...    28   6.7  
11_04_0466 - 18028169-18028306,18028997-18029306,18029399-180295...    27   8.9  
10_06_0042 - 10015657-10017840                                         27   8.9  
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    27   8.9  

>06_02_0255 -
           13522303-13522337,13524027-13524126,13524247-13524468,
           13524608-13524695,13525507-13525562
          Length = 166

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
 Frame = +3

Query: 252 SDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYS 428
           S +++W  IYP YLNSKKT+AEGRR+       +PT  EI D      +   +E +K Y 
Sbjct: 69  SSIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYP 128

Query: 429 RECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRES 530
           R    +    GR+RVQ+K DDG+PVNP   T  +
Sbjct: 129 R----DFFQVGRVRVQLKKDDGSPVNPAIKTNST 158


>10_08_0425 -
           17806117-17806401,17806862-17806984,17807076-17807222,
           17807307-17807450,17808557-17808668,17808762-17808898,
           17809016-17809156,17810921-17811004,17811275-17811742,
           17811858-17811936,17812494-17812506,17813884-17814460,
           17814502-17814774,17814899-17815045,17815354-17815413,
           17816124-17816510
          Length = 1058

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 498 PVNPEFPTRESVMKYIGESIP 560
           P NP  PTR  V   IG S+P
Sbjct: 334 PTNPSLPTRPEVFGAIGASVP 354


>11_04_0466 -
           18028169-18028306,18028997-18029306,18029399-18029513,
           18029596-18029732,18030198-18030520
          Length = 340

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 369 FLDV*GFRHKQI*EVCVLLRES-FCCSNMQGKCISIFPHH 253
           F+D+ G    QI    + L  + FCCSN++G+ I++   H
Sbjct: 103 FIDIVG----QIVRAMIALHNAGFCCSNLKGENIAVMKQH 138


>10_06_0042 - 10015657-10017840
          Length = 727

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 291 LNSKKTLAEGRRLPKSVCVENPTHQEIRDVLL 386
           L  + T AE RRL +S    +PTH + + +LL
Sbjct: 591 LRYRDTRAEARRLFRSAAAWDPTHHDAQRMLL 622


>07_03_0860 +
           22057309-22058453,22059833-22059964,22060328-22060412,
           22061666-22061867,22062273-22062344,22062509-22062573,
           22062682-22062741,22063033-22064379,22064463-22064607,
           22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 438 SKEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNRPVEQQP 602
           S+  L + R  V   N    P+NP  P++     ++  S+P +      PV+Q P
Sbjct: 623 SQPPLQQTRKDVVSSNHSSKPINPHIPSQVKSSVHVSPSVPNV-APPRPPVQQIP 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,732
Number of Sequences: 37544
Number of extensions: 295672
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)