Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b06
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067212-1|AAC16997.3|  160|Caenorhabditis elegans Hypothetical ...   107   8e-24
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    30   1.1  
Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81102-3|CAB03201.2|  189|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF067212-1|AAC16997.3|  160|Caenorhabditis elegans Hypothetical
           protein F37F2.2 protein.
          Length = 160

 Score =  107 bits (256), Expect = 8e-24
 Identities = 53/110 (48%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
 Frame = +3

Query: 252 SDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYS 428
           S  +RWI IYPAY++ KKT  +GR++ + + VENPT  EI DVL A G    +E  K Y 
Sbjct: 10  SSQKRWIVIYPAYIDKKKTAKQGRKISQILAVENPTSVEIHDVLAAVGFNPLLERTKCYP 69

Query: 429 RECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQ 578
           R+  ++   +GR+RVQ+KNDDG     E  TR+ + K + E IPKLKTRQ
Sbjct: 70  RDGERDFEVQGRVRVQLKNDDGT-AKHEQKTRDEIFKMVAEMIPKLKTRQ 118


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
            protein 10 protein.
          Length = 2302

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 222  ITSWNPEKKHSDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPT-HQEIRDVLLATGL 398
            +T  NP+ +  ++   +   P YL +++ LA+    P     ENP  H E+R+  LA G 
Sbjct: 871  MTLKNPDSQKINILVRLISSPEYLKNQEKLAQRPIYPMPWTRENPVIHVELREE-LAQGQ 929

Query: 399  RVGVENKLYSRECSKEMLYRG 461
             VGV   +     S+E+   G
Sbjct: 930  VVGVFPAVSQGNLSREIQISG 950


>Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical
           protein W04A4.5 protein.
          Length = 1071

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 542 IFHYRFSSRKFRIYRGTII-ILNLNAYSASVQHFLAAF 432
           IFH R SS + + Y G +I +LN  A+  S+ HF+  F
Sbjct: 647 IFHTRESSIEDQEYVGKLIMVLNAAAFQPSMVHFMPEF 684


>Z81102-3|CAB03201.2|  189|Caenorhabditis elegans Hypothetical
           protein M02B1.2 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 284 RVNAYPSFHITVLLFGIPRCYHT 216
           RVN YP F +T+LL G   CY T
Sbjct: 45  RVNEYPQFVVTLLLIG---CYAT 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,714,230
Number of Sequences: 27780
Number of extensions: 288993
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)