Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18b03
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 28 0.88
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 28 1.2
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 27 1.5
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 2.7
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 4.7
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 25 6.2
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 25 8.2
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 25 8.2
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 28.3 bits (60), Expect = 0.88
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 123 KNLKVGTKNVIRKKLISPEKILLPPLHIKLGMMKEFVKALDKNNASFE 266
K ++V +N K ++ E+I+ L I+LG++ VK D N+SFE
Sbjct: 631 KEMEVLCENNDLSKQLTSEEIVHMKLLIQLGLLSVKVKNGDYENSSFE 678
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 231 VKALDKNNASFEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKFDVTMNNTESDAWLAF 410
+ ++D + F Y+C+++PR AKI D + ++ F +N D F
Sbjct: 60 IPSIDLPPSFFNYVCEQLPRHPFAKIASSYIDTHTLFFQISISSFLCRFSNCSEDEIRLF 119
Query: 411 K--DAVNNFL 434
K ++++FL
Sbjct: 120 KQHQSLDSFL 129
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 27.5 bits (58), Expect = 1.5
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 204 IKLGMMKEFVKALDKNNASFEYLCKKIPRLSD--AKIKEGVFDGPQIRSLMADEKFDVTM 377
++ G +KE V ++N FE + +K P + AK G+ Q+RS + E F+ T+
Sbjct: 334 LRCGFLKEAVDFTEENRDLFEKVAEKFPFYINAYAKAPNGILP-RQLRSQLFSE-FNQTI 391
Query: 378 NNTESDAWLAFKDAVNNFLG 437
ES +K AV +G
Sbjct: 392 RLQESSD--PYKYAVYKIIG 409
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 2.7
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +3
Query: 198 LHIKLGMMKEFVKALDKN--NASFEYLCKKI-PR---LSDAKIKEGVFDGPQIRSL--MA 353
LH MK F+K LDKN ++ + K+ P+ L + K+ + D P+++ +
Sbjct: 15 LHPNKVEMKPFLKNLDKNLFKKTYNLVAAKVSPKKVGLLNKVCKKDLLDWPRVKHVYQQN 74
Query: 354 DEKFDVTMNNTESDAWLAFKDAVNNFLGNN 443
+EK + + D DA +F+ N
Sbjct: 75 NEKLVLLNRDASLDGTRGLSDATVSFIKEN 104
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 393 DAWLAFKDAVNNFLGNNKHPDYKNK 467
D+W F D NN HPDY+NK
Sbjct: 524 DSW--FNDTENNGHAQWVHPDYRNK 546
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 409 NASQASDSVLFIVTSNFSSAIKDLICGPSNTPSLIFASDNLGI 281
+ S+ +D +L V + S ++ GP +TP+L F S + GI
Sbjct: 430 SVSKGADDILQHVL-HLKSEQTGVVVGPDSTPTLSFTSGSEGI 471
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 261 FEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKF 365
F K +LSD K E + P+ SL+AD F
Sbjct: 127 FNPFAKLGSQLSDPKFMEKLASNPETASLLADSAF 161
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 373 VTSNFSSAIKDLICGPSNTPSLIFASDNLGIFLHRYSKL 257
V N S++++DL SN PS S NL + Y+ L
Sbjct: 308 VNDNVSTSVRDLTAADSNKPST--TSKNLKFTIMSYNVL 344
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 196 GGSKIFSGLINFFRITFFVPTLRFL-RGF 113
GG + F+GL++ +R T+ LR L RGF
Sbjct: 170 GGERQFNGLVDVYRKTYRSDGLRGLYRGF 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,439
Number of Sequences: 5004
Number of extensions: 49919
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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