Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18b03
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64844-5|AAM45362.1| 368|Caenorhabditis elegans Hypothetical pr... 32 0.35
U64844-4|AAB18307.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.46
AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm rec... 29 3.2
Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81132-10|CAB03433.1| 320|Caenorhabditis elegans Hypothetical p... 27 7.5
AL021447-4|CAB60285.3| 330|Caenorhabditis elegans Hypothetical ... 27 7.5
AC090999-22|AAK26159.1| 481|Caenorhabditis elegans Hypothetical... 27 7.5
U40160-1|AAA81155.3| 531|Caenorhabditis elegans Hypothetical pr... 27 9.9
U23139-12|AAU20847.1| 262|Caenorhabditis elegans Hypothetical p... 27 9.9
AF016429-3|AAB65366.1| 383|Caenorhabditis elegans Hypothetical ... 27 9.9
>U64844-5|AAM45362.1| 368|Caenorhabditis elegans Hypothetical
protein T22F3.2b protein.
Length = 368
Score = 31.9 bits (69), Expect = 0.35
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 219 MKEFVKALDKNNASFEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKFDVTMNNTE 389
+KE ++AL + F Y C K + SDA +K + PQI LM +F ++ N+E
Sbjct: 224 IKELMQALFTESKIFGYNCSKCKKKSDAPVKPTLLRAPQI-LLMHISRF--SLKNSE 277
>U64844-4|AAB18307.1| 376|Caenorhabditis elegans Hypothetical
protein T22F3.2a protein.
Length = 376
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 219 MKEFVKALDKNNASFEYLCKKIPRLSDAKIKEGVFDGPQI 338
+KE ++AL + F Y C K + SDA +K + PQI
Sbjct: 224 IKELMQALFTESKIFGYNCSKCKKKSDAPVKPTLLRAPQI 263
>AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm
receptor protein 41 protein.
Length = 335
Score = 28.7 bits (61), Expect = 3.2
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -2
Query: 146 FCSYFEIFTRIPLFLNVV 93
F +FE+FT++P+F+ +V
Sbjct: 4 FYDFFEVFTKVPIFITIV 21
>Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical
protein F19H8.4 protein.
Length = 749
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 78 RARDKHYVQK*WNPRKNLKVGTKNVIRKKL 167
RAR+++ VQ+ W PR+ + T V KL
Sbjct: 104 RAREQYKVQRKWQPRRPAAIPTTTVKTPKL 133
>Z81132-10|CAB03433.1| 320|Caenorhabditis elegans Hypothetical
protein T26E4.12 protein.
Length = 320
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 272 QVFKTSIVFIQCFNELFHHTEF-DMKRR**NLFRTN*FFSYNVFCSYFEIFTRIPLFLNV 96
QVF S +F+ F + T+ D K + + + FF ++ CS F +P +LNV
Sbjct: 228 QVFLPSFIFLGVFVFVGMFTQLIDPKI---SQYLVSVFFMFSPICSPFSYILFVPHYLNV 284
Query: 95 VL 90
+L
Sbjct: 285 IL 286
>AL021447-4|CAB60285.3| 330|Caenorhabditis elegans Hypothetical
protein F19B2.8 protein.
Length = 330
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 448 CLLFPRKLLTASLNASQASDSVLFIVTSNFSSAI 347
CL+FP + +N + S ++LF + SNF +
Sbjct: 35 CLIFPCFVYLFKMNRERDSKTILFPILSNFYKVV 68
>AC090999-22|AAK26159.1| 481|Caenorhabditis elegans Hypothetical
protein Y82E9BR.17a protein.
Length = 481
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 385 LNQMLG--WRSKMLSTIF*EIINIPTIKIRLQTYXXKY-QKLGCNMSIKLHFLDSHVDF 552
+ Q+LG W++ I E++N TI+ +Y +K+ C M++KL + D H DF
Sbjct: 115 IKQILGNFWKTYSEPRIAEEVLN--TIERFCVITMGRYVRKILCYMNVKLDWFDFHFDF 171
>U40160-1|AAA81155.3| 531|Caenorhabditis elegans Hypothetical
protein C56E10.3 protein.
Length = 531
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 234 KALDKNNASFEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKFDVTMNNTESDAWLAF 410
K LDK +E LCKK +L K + V + Q+ + +DE D + E +A +F
Sbjct: 43 KQLDKKCGEYEQLCKKTAKLKAEKSRLDV-ESTQL-TAQSDE-IDQSFTKVEQNAEASF 98
>U23139-12|AAU20847.1| 262|Caenorhabditis elegans Hypothetical
protein F13H8.1b protein.
Length = 262
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 339 RSLMADEKFDVTMNNTESDAWLAFK 413
R+L+AD+K + E DAWL F+
Sbjct: 208 RNLLADKKSKEAIRRIEHDAWLDFE 232
>AF016429-3|AAB65366.1| 383|Caenorhabditis elegans Hypothetical
protein T21H3.5 protein.
Length = 383
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 356 ISHQRSDLRSIEHSFFNFCIR*SWNFFTQVFKTSIVFIQCFNELFHHTEFDMK 198
+SH+ ++ H F F + W+F VF +I +I CF +F MK
Sbjct: 175 VSHRDVVMKLSGHDFSYFVV--DWSFSLLVFTFTIPYITCFIVSLVFHKFYMK 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,090
Number of Sequences: 27780
Number of extensions: 264386
Number of successful extensions: 715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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