Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18b03
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   3.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   3.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.0  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 378 NNTESDAWLAFKDAVNNFLGNNKHPDYKNKVANLLXEVSKIGV 506
           NN +   +  + +  NN   NN + +YK    N +  + +I V
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 378 NNTESDAWLAFKDAVNNFLGNNKHPDYKNKVANLLXEVSKIGV 506
           NN +   +  + +  NN   NN + +YK    N +  + +I V
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPV 129


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 490 YQKLGCNMSIKLHFLDSHVDFFPDNLGDYSG 582
           Y+KL CN   KL++  ++++  P  +  Y G
Sbjct: 96  YKKLYCNNYKKLYYNINYIEQIPIPVPIYCG 126


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 490 YQKLGCNMSIKLHFLDSHVDFFPDNLGDYSG 582
           Y+KL CN   KL++  ++++  P  +  Y G
Sbjct: 96  YKKLYCNNYKKLYYNINYIEQIPIPVPIYCG 126


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 490 YQKLGCNMSIKLHFLDSHVDFFPDNLGDYSG 582
           Y+KL CN   KL++  ++++  P  +  Y G
Sbjct: 96  YKKLYCNNYRKLYYNINYIEQIPIPVPIYCG 126


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 257 SIVFIQCFNELFHHTEFD 204
           S+VF +  NE+F+   FD
Sbjct: 230 SLVFTKIDNEIFNRVPFD 247


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 123 KNLKVGTKNVIRKKLISPE 179
           KN K G+K++++   + PE
Sbjct: 330 KNKKAGSKHLLQNTWLDPE 348


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 493 QKLGCNMSIKLHFLDSH 543
           +   C  S+K HF D H
Sbjct: 13  RNFSCYYSLKRHFQDKH 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,655
Number of Sequences: 438
Number of extensions: 3294
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)