Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18b01
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0451 - 3404749-3405171,3405444-3405599,3405711-3406583,340... 32 0.47
12_02_0651 + 21522089-21522128,21522472-21522593,21523386-215235... 29 2.5
01_05_0433 - 22094784-22095659 29 3.3
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 29 3.3
06_03_1182 + 28233916-28234240,28235279-28235305,28236348-28236448 29 4.3
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 28 5.7
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801... 28 7.6
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 7.6
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 28 7.6
>07_01_0451 -
3404749-3405171,3405444-3405599,3405711-3406583,
3406847-3406942
Length = 515
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 195 RQQKQHGQNKTVPPPNHFHFREI-IKKISILNTKIHYIFHVITETLIL 55
R +K HG+ +T+PP H+H +E+ I ++ H++ +++L
Sbjct: 385 RYRKAHGKLRTLPPCPHYHLKEVNIAGFYGQKDQLELAHHILRNSVVL 432
>12_02_0651 +
21522089-21522128,21522472-21522593,21523386-21523544,
21523653-21523730,21523821-21523865,21524121-21524187,
21524261-21524322,21524407-21524546,21524752-21524878,
21524957-21525071,21525210-21525298,21525533-21525616,
21525857-21526219,21526300-21526689,21526835-21526894,
21527530-21527553
Length = 654
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 503 ASRLLRPEAATITTKPLYVDVNLGASVHRTLH 598
AS + P + ++PL + NLGAS+HR H
Sbjct: 433 ASTVEHPPRRELLSEPLLQNPNLGASLHRQFH 464
>01_05_0433 - 22094784-22095659
Length = 291
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 316 PGRRAPPVLAAPKTI-APLTRTTSRRLLECYVCAYKT 423
PGR PP + PK + AP R SRR C C + T
Sbjct: 48 PGRVPPPPMYRPKPMQAPARRRRSRRGWCCACCLWMT 84
>01_01_0484 -
3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 334 PVLAAPKTIAPLTRTTSRRLLECYVCA 414
P LA P IAPL+ + S RL C+V A
Sbjct: 95 PELALPLLIAPLSASPSPRLASCFVKA 121
>06_03_1182 + 28233916-28234240,28235279-28235305,28236348-28236448
Length = 150
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 361 APLTRTTSRRLLECYVCAYKTDTPIRSCLDPAKHRV 468
+P T + + +L+ C TDTP +C DP K V
Sbjct: 29 SPSTPSCASKLVPCAQYMNGTDTPPAACCDPLKEAV 64
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 454 AKHRVHVITCHSTEDKCFTSVTSRGSDNNYEAVIRGCKSGCVGSP--DTTCCELNRC 618
AK C ST +CF ++ +G N C G G+P D C ++N C
Sbjct: 271 AKRNATDYACRSTNSECFDTIDGQGYRCN-------CCQGYEGNPYLDGGCTDINEC 320
>07_01_0954 -
8016804-8016905,8017409-8017469,8017543-8017649,
8018278-8018382,8018460-8018546,8018631-8018711,
8018872-8018944,8019288-8019400,8019695-8019788,
8020060-8020115,8020212-8020295,8020384-8020476,
8020592-8020765,8020956-8021099,8021225-8021380
Length = 509
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 364 PLTRTTSRRLLECYVCAYKTDTPIRSCLDPAKHRVHVIT 480
PLTRT ++ + C D P+ +C++ ++++V+T
Sbjct: 91 PLTRTRAKPAVPVGGCYRLIDIPMSNCINSKINKIYVLT 129
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3
Query: 153 PNHFHFREIIKKISILN 103
P +FHFR+I++KI +L+
Sbjct: 1380 PENFHFRDIVEKIELLS 1396
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 153 PNHFHFREIIKKISILNTKIHYIFHVITETLIL 55
PN F FRE + K ++ + Y V T+ L L
Sbjct: 475 PNRFSFREFVTKDNVTGSMKGYCIDVFTQALAL 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,053,066
Number of Sequences: 37544
Number of extensions: 288982
Number of successful extensions: 969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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