Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18a24
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 53 3e-08
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.059
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 29 0.55
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.73
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 0.97
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 1.3
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 27 1.7
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 1.7
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 2.2
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 2.2
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.0
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 27 3.0
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 3.9
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 25 6.8
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.8
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 9.0
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 53.2 bits (122), Expect = 3e-08
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Frame = +2
Query: 203 DVDFAMDVETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLN 382
D D +D + + ++ Y V+S ++ + + I ++ +++++ L
Sbjct: 29 DEDAEIDDDGFTVERKRRRAHSVSYRVVSVRDLRASLNEKINQLTSIIDLTREQVLGLYR 88
Query: 383 HFKWDKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICF--S 556
+FKW++E+L+ER+ D ++ L +K + +R CEIC+
Sbjct: 89 YFKWNRERLLERYIDAPEESL----------QKAGVGLSGSKQREVVHHEGTCEICYDEG 138
Query: 557 VLPTSIMTGLECGHRFCTQCWCEYL 631
LP EC H FC C+ +YL
Sbjct: 139 CLP---FFSAECDHEFCLACYRQYL 160
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 32.3 bits (70), Expect = 0.059
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 536 ECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 631
EC+ICF +L +++ CGH FC C + L
Sbjct: 168 ECQICFGMLYDPVVS--PCGHTFCGPCLMQAL 197
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 29.1 bits (62), Expect = 0.55
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 317 DCIKEVNTVVEIPATTTRILLNHFKWDKEKLME 415
+ I E+ +++PA T + +L F WD ++ +E
Sbjct: 8 EAIDELRNSLDVPADTAQSVLESFNWDVQEAIE 40
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 28.7 bits (61), Expect = 0.73
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 527 GMEECEICFSVLPTS-IMTGLECG---HRFCTQC 616
G+EEC IC+SVL + CG H+F C
Sbjct: 1554 GVEECAICYSVLSVERTLPNKRCGTCRHKFHASC 1587
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 28.3 bits (60), Expect = 0.97
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 527 GMEECEIC-FSVLPTSIMTGLECGHRFCTQC 616
GM +C +C FS + ++ CGH FC+ C
Sbjct: 635 GMLKCSVCNFSNWKSKLIPN--CGHAFCSNC 663
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 527 GMEECEICFSVLPTSIMTGLECGHRFCTQC 616
G +C +C + T ECGH FC C
Sbjct: 252 GNRKCSLCMEFIHCPAAT--ECGHIFCWSC 279
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 536 ECEICFSVLPTSIMTGLECGHRFCTQCWCE 625
EC ICF P++ C C++C+ E
Sbjct: 150 ECPICFLYYPSNFNYTRCCAQPICSECFVE 179
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 395 DKEKLMERFYDGDQDQLFSEARVINPFRK 481
D K+ +RFYD D + F E+ PF K
Sbjct: 290 DDGKMTKRFYDLDGNDFFWESNASKPFPK 318
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 500 KLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 631
K+P C IC ++T C H FC+ C +YL
Sbjct: 16 KIPSLKGLDSSLRCLICHEYFRAPLITS--CSHTFCSFCIRDYL 57
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 539 CEICFSVLPTSIMTGLECGHRFCTQCWCEYL 631
C+IC V +I + C H FC C EY+
Sbjct: 711 CKICDEVAQDAIES--RCHHTFCRLCVTEYI 739
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 497 PKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 616
PKLP I+ S + C+IC + + L G FC C
Sbjct: 243 PKLPFEINVSTTDICKICGEKIKNPAV--LSTGFVFCYPC 280
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 263 EEYPYEVLSTEE--IVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQ 436
EE+ + L E ++++M++ + E+N + +P ++ +L +W E Y G +
Sbjct: 12 EEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEW-CEHHKNDLYSGTE 70
Query: 437 DQ 442
++
Sbjct: 71 EE 72
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 539 CEICFSVLPTSIMTGLECGHRFCTQC 616
C IC + I T CGH FC QC
Sbjct: 254 CLICKKDYRSPIAT--TCGHHFCEQC 277
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 344 VEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRIST 523
+E+P RIL + +W+ + F +Q QL S R NP + + +L RR
Sbjct: 361 IELPLLHRRILTHTTEWNINWCIFNFVFDEQGQLRSAFR--NPNSRKRLSE-ELRRRFIV 417
Query: 524 SGMEEC 541
+G C
Sbjct: 418 AGFLNC 423
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 6.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 584 LECGHRFCTQCW 619
++CGHR C CW
Sbjct: 262 VKCGHRSCPICW 273
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 384 ISNGTKRSLWNVFMMETRISCSLKLEL 464
IS + +SL+N +M T CS+ ++
Sbjct: 266 ISGSSTKSLYNDYMFHTEFKCSILYDI 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,226
Number of Sequences: 5004
Number of extensions: 55677
Number of successful extensions: 196
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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