Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a23
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   3.0  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   3.0  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   3.0  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   5.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   7.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   9.2  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   9.2  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +3

Query: 351 DIQCCIRDANFRQHVICVEYKSYQKLLVKSTQLPHAGS-----LEREYNNLDEIVTTFRE 515
           D+   ++DA   Q  + V+  S+QK LV+  +  +A S     +E  Y + + +VT   +
Sbjct: 698 DLDKQLKDATASQKELIVQTSSFQKELVEERERHNAISKRLQEIESLYRDRELLVTNLED 757

Query: 516 FILDLT 533
            ++D T
Sbjct: 758 QLVDQT 763


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 334 NRICTLISFSYFCT--SFNKLLSMRLNELIS 248
           +R+C +I +S  CT  S N+ L  +L +LIS
Sbjct: 499 DRVCQIILYSSICTSCSINESLKTKLPKLIS 529


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 69  FYLQYLCPLKHKICKKYSEMYAGGNSVKEIFTELFSSKSNAVLDLLDRFHFEVD 230
           +YLQYL PL+      Y    A  N  ++  +E  S+ S+  +D +    + +D
Sbjct: 383 YYLQYLTPLRESGAIGYLGSPAISNVGEDWLSEFMSACSDCKIDFIACHWYGID 436


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 141 NSVKEIFTEL-FSSKSNAVLDLLDRFHF 221
           N +  +F+ L + +KS+AV+ L D+FHF
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHF 91


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 125 NVCRREFSERDFYRTFF 175
           + CR+ F+E+D Y+ FF
Sbjct: 920 HTCRQPFNEQDVYKPFF 936


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 249 RRSLSQSPPQNETYPKDLTRHY 184
           RR LSQ P   ++YP  L  HY
Sbjct: 775 RRGLSQLPWALQSYPSPLNIHY 796


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 116 VFRNVCRREFSERDFY 163
           V++ +C+ E SERDFY
Sbjct: 497 VYKVICKFEESERDFY 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,476
Number of Sequences: 5004
Number of extensions: 47879
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)