Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18a22
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0764 + 5910687-5910961,5912549-5912636,5912750-5912909,591... 30 1.7
01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926... 29 4.0
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107... 28 5.3
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669... 28 5.3
06_03_0747 - 24119049-24119878,24120010-24120096,24120180-241202... 28 5.3
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 28 7.0
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 27 9.3
05_02_0080 + 6425343-6425556,6425613-6425857 27 9.3
>01_01_0764 +
5910687-5910961,5912549-5912636,5912750-5912909,
5913017-5913237,5913315-5913610,5914176-5914287,
5914376-5914514,5914850-5915046,5915134-5915223,
5915611-5915646
Length = 537
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +2
Query: 308 IGLPIDLVNFLIAQVAALFLARLFRKPLRYASPEFRHSVCLIIGLIMGYFCFGKQAIHMS 487
+G P ++ FL V +L FR+ + S L++ +I Y+C+GK S
Sbjct: 211 LGWPFSILVFLPITVYSLIRGS-FRRV--FLSGFLTSMFLLVLSVIADYYCYGKWT--AS 265
Query: 488 VLPMLNYALFKTVPHHIMG 544
V +L Y +F H+ G
Sbjct: 266 VFNLLKYNVFGGGESHLYG 284
>01_05_0126 -
18391879-18391937,18392021-18392102,18392508-18392667,
18392739-18392807,18392850-18392992,18393069-18393203,
18393283-18393341,18394090-18394187,18394347-18394510,
18394586-18394647,18394803-18394977,18396331-18396588,
18396694-18396841,18398458-18398813
Length = 655
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 593 VNANTKDISWKLPELGSPLCDEGQS*TEHNLTLEARTCVWL 471
VN NT + K G P ++G+ T ++ L RTC W+
Sbjct: 243 VNGNTPILDIKT---GKPYVEDGRQWTARDIGLTHRTCAWM 280
>10_08_0781 +
20509033-20509714,20510048-20510191,20510604-20510719,
20511356-20511520,20511822-20512043,20512613-20512735
Length = 483
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 34 LCT*T*NVALYYKKTVDHSN--CVENVIKLIERKKIPCHETQTSVLLTI*NTYHHNKYII 207
LCT Y KT+ SN CV ++ + +I H + ++TI +TY + +
Sbjct: 89 LCTEISTGCQYACKTILKSNLRCVSDIEDVRREIQIMHHLSGQKNIVTIKDTYEDEQAVH 148
Query: 208 YLIHLCAPG 234
++ LCA G
Sbjct: 149 IVMELCAGG 157
>06_03_1072 +
27365834-27365945,27366360-27366464,27366844-27366929,
27367445-27367631,27368031-27368142,27368235-27368337,
27368424-27368469,27368670-27368708,27368803-27368959,
27369031-27369133,27369337-27369453,27369880-27369957,
27370044-27370145,27370252-27370345,27370432-27370542,
27370643-27370707,27370949-27371097,27371349-27371581,
27371778-27371908,27372016-27372126,27372210-27372326
Length = 785
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 232 LEHTNVLNKLCTCYGDRYSKL 170
L+H+N +N +CT YG +YSK+
Sbjct: 332 LKHSNEIN-VCTIYGQQYSKV 351
>06_03_0747 -
24119049-24119878,24120010-24120096,24120180-24120285,
24120400-24120593,24120663-24120906,24120982-24121060,
24121148-24121227,24122181-24122276,24122372-24122443,
24122534-24122731,24123050-24123252,24123376-24123895
Length = 902
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 446 LLNQ**GRHCDGIPATHISMVSEIIWPGIV 357
L N GRH DG+P H++ E W G++
Sbjct: 43 LFNDTQGRHSDGLP--HLNQAEEATWMGLL 70
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 326 LVNFLIAQVAALFLARLFRKPLRYASPEFRHSVCLIIGLIMGYFCFGKQAIHM 484
L+N L A ++ RLFR +R+A F ++ ++ L+ + +HM
Sbjct: 97 LLNHLPASSSSSTTFRLFRFAMRHAHAAFHPNIASLLSLLRASSSYSDHFLHM 149
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 247 HFYVILEHTNVLNKLCTCYGDRYSKLLTKRLFVFRGT 137
H+Y I +H ++ N L TC+ YS +T + +F GT
Sbjct: 540 HYYGIFDHHSLFNVLRTCH-PSYSS-ITNMISLFWGT 574
>05_02_0080 + 6425343-6425556,6425613-6425857
Length = 152
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 439 FNNGLFLFWKASHTHVRASNVKLCSVQDCPSSHNGEPNSGSFHDISFVFA 588
F +G + H HV S + +CS+ C N GS +F+FA
Sbjct: 41 FGSGRGSSGERRHGHVAGSWLTVCSLVQCLGGIGNNINKGSLVIATFLFA 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,929,580
Number of Sequences: 37544
Number of extensions: 318614
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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