Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a22
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-1|AAA81391.1|  480|Caenorhabditis elegans Hypothetical pr...    60   1e-09
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    56   3e-08
AF067612-5|AAM98011.3|  195|Caenorhabditis elegans Egg laying de...    31   0.51 
Z70718-8|CAA94675.2|  301|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical...    28   6.3  
AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical...    27   8.4  

>U40410-1|AAA81391.1|  480|Caenorhabditis elegans Hypothetical
           protein C54G7.2 protein.
          Length = 480

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
 Frame = +2

Query: 266 YYDGSHFFLFLSSRIGLPIDLVNFLIAQVAALFLARLFRKP--LRYASPEFRHSVCLIIG 439
           +YDGS     L+  IG+  D VNF+++  A   ++ ++RK   L+  + + R  V  ++G
Sbjct: 7   FYDGSKILEPLAETIGIEADRVNFVLSLFACFGISYVYRKTCSLKQVNRQVRTVVPAVVG 66

Query: 440 LIMGYFCFGKQAIHMSVLPMLNYALFKTVPHHIMGNLTLAASMIYLSCLHLHRXNI 607
           + + +FCFG+   H+    + +YA+    P   +  + L  SM YL  +H +R  I
Sbjct: 67  IGIVFFCFGRAIKHLLANALGSYAIMYFAPPTQVHKIVLLFSMGYLFFIHCYRWAI 122


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 34/121 (28%), Positives = 57/121 (47%)
 Frame = +2

Query: 236 NIKMPKTNNDYYDGSHFFLFLSSRIGLPIDLVNFLIAQVAALFLARLFRKPLRYASPEFR 415
           N  + ++N+ +YD       +S  I + +D +NF+   + +  L   FR     AS   R
Sbjct: 5   NEDVDESNHIFYDPVTLLRPVSRAISMNLDQLNFVTVLLLSFGLGYWFRVQFCDASRTTR 64

Query: 416 HSVCLIIGLIMGYFCFGKQAIHMSVLPMLNYALFKTVPHHIMGNLTLAASMIYLSCLHLH 595
            +V   +GLI  YFC+G    H+ +    +Y L  +VP   +     A +M YL  +H +
Sbjct: 65  AAVTTSVGLIFTYFCYGNAIAHLFINGFGSYLLMVSVPPQHVHKSVFAFAMGYLVLIHSY 124

Query: 596 R 598
           R
Sbjct: 125 R 125


>AF067612-5|AAM98011.3|  195|Caenorhabditis elegans Egg laying
           defective protein 4,isoform d protein.
          Length = 195

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 257 NNDYYDGSHFFLFLSSRIGLPIDLVNF 337
           + DYYDG H+ +    ++  P D+ NF
Sbjct: 148 DQDYYDGGHYIIRQGEKVSNPADVTNF 174


>Z70718-8|CAA94675.2|  301|Caenorhabditis elegans Hypothetical
           protein C04G2.10 protein.
          Length = 301

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 70  KKTVDHSNCVENVIKLIERKKIPCHETQTSVLL 168
           KK  D S C  N++ L++RKK+  + TQT +++
Sbjct: 31  KKLADDSRCYGNILDLVKRKKV-TNWTQTRLVV 62


>Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical
           protein W05B10.5 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = +2

Query: 260 NDYYDGSHFFLFLSSRIGL------PIDLVNFLIAQVAALFLARLFRKPLRYASPEFRHS 421
           NDY+    F  F+   +G       P   V     ++ A+F   ++ +  RYA   F   
Sbjct: 82  NDYFLPHMFNAFMGQLVGWFAWCIGPFSQVLLTSNRIFAVFFPHVYSRNYRYAPSSFGIL 141

Query: 422 VCLIIGLIMGYFCFGKQAIH 481
           +CL +  I+ +  F  +  H
Sbjct: 142 ICLTLAFIV-FIAFFPEGCH 160


>AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical
           protein Y46G5A.25 protein.
          Length = 600

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 217 VLNKLCTCYGDRYSKLLTKRLFVFRG 140
           ++  +CTC  D++ +L  KR+FV  G
Sbjct: 376 IVEVMCTCLCDKFPRLREKRVFVVIG 401


>AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical
           protein Y39B6A.48 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = -1

Query: 208 KLCTCYGDRYSK--LLTKRLF 152
           +LC+CYGDR+S   ++ K++F
Sbjct: 166 QLCSCYGDRFSTSVIVLKKIF 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,720,396
Number of Sequences: 27780
Number of extensions: 317576
Number of successful extensions: 713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)