Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a22
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.61 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.61 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   7.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 544  PHYVMRDSLEQSII*HWKHGHVYGLLSKTEIAHY*T 437
            P   +  S   SI+ HWK GH  G        HY T
Sbjct: 1408 PVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRT 1443


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 544  PHYVMRDSLEQSII*HWKHGHVYGLLSKTEIAHY*T 437
            P   +  S   SI+ HWK GH  G        HY T
Sbjct: 1404 PVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRT 1439


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -3

Query: 497 LEARTCVWLAFQNRNSPLLNQ**GRHCDGIPATHISMVSEIIWPGIVQLLVRSKN*QDL* 318
           L   + VW A+      LLN   G   +G P +  + V  ++W G   ++V S    +L 
Sbjct: 608 LNLSSAVWFAW----GVLLNSGIG---EGTPRSFSARVLGMVWAGFAMIIVASYT-ANLA 659

Query: 317 AVLFLRR 297
           A L L R
Sbjct: 660 AFLVLER 666


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 83  STVFL*YSATFYVYVH-NKT*LINLN 9
           +  F+ Y   F++YVH + T  ++LN
Sbjct: 125 TAAFISYGTLFFIYVHPSATFSLDLN 150


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 374 IWPGIVQLLV 345
           +WPG+++LLV
Sbjct: 1   MWPGVLKLLV 10


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 374 IWPGIVQLLV 345
           +WPG+++LLV
Sbjct: 1   MWPGVLKLLV 10


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 581 TKDISWKLPELGSPLCD 531
           T D+SWK P +    C+
Sbjct: 143 TGDVSWKPPAIYKSSCE 159


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 229 EHTNVLNKLCTCYGDRYSKL 170
           E   V + + TCYG R  K+
Sbjct: 255 ESCGVADLIATCYGGRNRKI 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,758
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)