Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a21
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   0.60 
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   3.2  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   4.2  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   5.6  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.7  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   9.7  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   9.7  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   9.7  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   9.7  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   9.7  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 23/92 (25%), Positives = 42/92 (45%)
 Frame = -2

Query: 660 DRTPSKPSSNVTTSTMISCMMALSIAYKLISCTADSQGYT*YVCSRIR*LPARRSPINKK 481
           D++ ++      T  + + ++ALS+AY   +  + S        S++   P RRS  N  
Sbjct: 91  DKSQNQSKDGSITDPVQAAVLALSVAYAKPTSVSLSPTDL-QAQSKLIEKPRRRSASNAT 149

Query: 480 QLLAASKRSSLRQFSVPKRATPAGRSSSARNT 385
             L    +  LR+FS+ + A  A  + S  N+
Sbjct: 150 GSLNKKNQDPLRRFSISESAGAAAPTPSPSNS 181


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 143 LNNGSCPPMRPARGYRTPVAVWIE*RLHEEGL 238
           L+N   P   PA  Y   V  WIE RLH++ +
Sbjct: 127 LDNNRKPVHLPAPQYIEYVLAWIENRLHDQNV 158


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 200 RQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKDFYKFKLKILQ 54
           RQ+Y   +  A V+K   SK   + CG++++   +LV+   K   +I++
Sbjct: 129 RQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIK 177


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = -3

Query: 380 LQQDAPNINREINVNSIMYKL*VNLAILIPETNTQSLGARSRRSTSNVDLLRASATQSKQ 201
           +++++    RE  ++ +M +    LAI + + N Q +   +RRST +  L  A+A +  +
Sbjct: 95  IERESILFEREEEISKLMERR--ELAIRLHQQNAQYMAQSTRRSTRDKPLTSAAAGKRDK 152

Query: 200 RQEYGNHEPDAS 165
             E      + S
Sbjct: 153 LTELKKRRQERS 164


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 299 LIPETNTQSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKT 153
           L P  +T     R     S V++   S T  + +  + NHE D S+D T
Sbjct: 45  LKPIKSTSDRKRRRHSRMSIVNVWNQSPTSYRDQLLHFNHESDVSIDDT 93


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 468 ASKRSSLRQFSVPKRATPAGR 406
           +S  S  R+  +P+RATPA R
Sbjct: 541 SSNSSGTRRLGLPQRATPASR 561


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 254 RSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKD 84
           +ST NV+ L +     KQ  ++   E    +  + Y  H D+  GA+ +     +KD
Sbjct: 197 QSTYNVERLISLLLSKKQPCDFVVREVLVQIVHSFYKAHLDKEEGAMQVFSLFSIKD 253


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 89  SLTMSF*CSERRKHGHHVLNNGSC 160
           SLT    CS  RK+GH V+    C
Sbjct: 17  SLTFPMQCSALRKNGHVVIKGRPC 40


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 510 PARRSPINKKQLLAASKRSSLRQFSVPKRATPA 412
           PA   P N K+ +  +  S  ++ + PK+ATPA
Sbjct: 52  PAVTDPSNAKKEINMAIESPSKKATSPKKATPA 84


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 616 YDLLYDGFVHRLQTYFLHGGFSGLHVIRLLPHPMTSS 506
           +D+LYD FV R +   LH   + +    ++P P  +S
Sbjct: 561 FDILYDYFVKRNRYGVLHSKSNSVKDAYIIPMPSGNS 597


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 89  SLTMSF*CSERRKHGHHVLNNGSC 160
           SLT    CS  RK+GH V+    C
Sbjct: 17  SLTFPMQCSALRKNGHVVIKGRPC 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,532
Number of Sequences: 5004
Number of extensions: 53852
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)