Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a21
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.64 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.0  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 249 RSPAPCTK*LGVCFRYQNGQVHSQL 323
           R+P+ C++       Y NGQ HSQL
Sbjct: 360 RTPSKCSQ---TSVHYSNGQTHSQL 381


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 516 IGCGSKRITCNPENPPC 566
           IGC +++  C+  + PC
Sbjct: 91  IGCSAEKFECSKTSNPC 107


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 1   GKIIILCD--RLRKISSNKYCKIFSLNL 78
           G+I +L +  R+  + +  YC +FSL++
Sbjct: 521 GEICLLTNARRVASVRAETYCNLFSLSV 548


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 1   GKIIILCD--RLRKISSNKYCKIFSLNL 78
           G+I +L +  R+  + +  YC +FSL++
Sbjct: 489 GEICLLTNARRVASVRAETYCNLFSLSV 516


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 4   KIIILCDRLRKISSNKYCKIFSLNL*KSFTN 96
           +I + C  L + S NK C   SL + K+F N
Sbjct: 79  RINLKCS-LVEFSENKNCNAGSLTVKKNFAN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,902
Number of Sequences: 438
Number of extensions: 3892
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)