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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a18
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    58   9e-10
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    45   6e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    40   2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    37   0.002
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    35   0.007
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    33   0.021
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    32   0.065
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.15 
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    31   0.15 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    29   0.46 
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    28   0.80 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    28   1.1  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    28   1.1  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.4  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   1.8  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   2.4  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   5.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   5.6  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   5.6  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   7.4  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    25   7.4  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.8  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.8  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.8  
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.8  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 58.0 bits (134), Expect = 9e-10
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
 Frame = +1

Query: 67  SCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGNAI 243
           SC V++G IP++  E+ ++ +F+Q+G +  F+L+I+  SG  +GY F  Y   A A +A+
Sbjct: 4   SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63

Query: 244 RLFNNY 261
           R  NNY
Sbjct: 64  RNLNNY 69


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 76  VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGNAIRLF 252
           VF+G IP+D  E  +  +F Q G +  F+L+++  +G  +GY F  +        A+R  
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query: 253 NNYMIRP 273
           NN  + P
Sbjct: 69  NNSELGP 75


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 55  EPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEA 225
           E  ++ ++F+G +P DC E+     F Q G + +  LM++  +G  RG+ F  Y  E+
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENES 299



 Score = 30.7 bits (66), Expect = 0.15
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 46  TGPEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLM-INFSGWNRGYAFAMY 213
           T P      ++FIG +  +  +DSL   F+Q GE+ +  +M  + +G +RG+ F  +
Sbjct: 155 TSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 64  RSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAI 243
           +  ++ I  +P +  +  +  L    G+L   R+   F    RG+AFA + T  EA NA+
Sbjct: 719 KGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAM 778

Query: 244 RLFNN 258
           R   N
Sbjct: 779 RALKN 783



 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 61  SRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWN-RGYAFAMYTTEAEAGN 237
           S +  +F+  + + C ED L  LF   G+L +  + I+    N +G+A   Y    +A +
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFA---YIDFHDADD 376

Query: 238 AIRLFNNYMIRP 273
           A+R +     +P
Sbjct: 377 AVRAYLELDAKP 388


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 76  VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGNAIRLF 252
           +++GR+PH  +E  +   F Q G +   R+  N  +G ++ YAF  + +   A       
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166

Query: 253 NNYMI 267
           +NY++
Sbjct: 167 HNYLL 171


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 33.5 bits (73), Expect = 0.021
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +1

Query: 91  IPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFNN 258
           +P++     L  LF+QAG +    + +N  G +RG    + ++  EA +AI++ +N
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHN 245


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 31.9 bits (69), Expect = 0.065
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 49  GPEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMY 213
           G    R   +F+G +P D   ++L   F++AG++   R+  +  SG  +GYAF  +
Sbjct: 85  GKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 55  EPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFR-LMINFSGWNRGYAFAMYTTEAEA 231
           + + +C VF+GR+  +  +  L   F++ G +   R +M   SG ++GY +  + T   A
Sbjct: 258 DSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA 317

Query: 232 GNAI 243
             A+
Sbjct: 318 KAAV 321


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = +1

Query: 55  EPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAG 234
           + + S  ++I  +P    E  +  LF+ + ++   R++ +    +RG  FA       A 
Sbjct: 379 QDTESTNLYISNLPLHWNESDISTLFKPS-KIISNRVLRDSKEQSRGVGFARMQDRKTAE 437

Query: 235 NAIRLFNNYMIRPS 276
           + I  FNN+++ P+
Sbjct: 438 DIINKFNNFVLDPA 451


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +1

Query: 61  SRSCEV--FIGRIPHDCFEDSLVPLFQQAGELFEFRLMI---NFSGWNRG---YAFAMYT 216
           ++ CE+  ++G +P  C    L  LF+  G   +F ++    N S  ++    +AF  + 
Sbjct: 15  TKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFE 74

Query: 217 TEAEAGNAIRLFN 255
            +  A NAI   N
Sbjct: 75  NKCSADNAIASLN 87


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 76  VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINF-SGWNRGYAFAMYTTEAEAGNAIRLF 252
           + +  IP    +D+L+  F+Q G    +    ++ +G  RG AFA +    EA   ++  
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263

Query: 253 NNYMI 267
           N Y I
Sbjct: 264 NGYEI 268


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 76  VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINF 177
           +F+GRIP     + ++  F+  G++ + +LM  F
Sbjct: 6   LFVGRIPPQATREDMMDFFKGYGQILDCKLMNGF 39


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +1

Query: 115 SLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFNNYMIRP 273
           +LVPL Q        R + NFS  NRG A A Y  ++   + I L+ NY + P
Sbjct: 48  TLVPLEQNT-----VRFIDNFSAGNRGAASAEYFCKS-GYSVIFLYRNYSLMP 94


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +1

Query: 76  VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMY 213
           +F+G + +D  ++SL   F +   L + +++ +  G  RG+ F  +
Sbjct: 32  LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSF 77


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/83 (21%), Positives = 32/83 (38%)
 Frame = +1

Query: 10  GQRIYRKATHAWTGPEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWN 189
           G  + R+   +      +    V+I  +  +  E     LF Q GE+    L+ + +   
Sbjct: 241 GHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP 300

Query: 190 RGYAFAMYTTEAEAGNAIRLFNN 258
           RG+ F  Y     A  A+   N+
Sbjct: 301 RGFGFVNYANHECAQKAVDELND 323


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 76  VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGNAIRLF 252
           +F+  +     +D L   F   G +    ++ N  +G NRGY F  ++   +A  A +  
Sbjct: 7   LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66

Query: 253 NN 258
            N
Sbjct: 67  KN 68


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 76  VFIGRIPHDCFEDSLVPLFQQAGELFEF-RLMINFSGWNRGYAFAMYTTEAEAGNAIRLF 252
           +F+G +     E  L   F   G+L +  ++  + +G ++GY F  Y +   A  AI   
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160

Query: 253 NNYMI 267
           NN  +
Sbjct: 161 NNQFL 165


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 52  PEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSG 183
           P P + C + + R  +  FEDS   + +Q+    + RLMI F G
Sbjct: 408 PLPGQ-CHIKVRR--NHIFEDSYAEIMRQSATDLKKRLMIKFDG 448


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 233 PASASVVYMAKAYPLFHPEKLIISLNS 153
           PA++    + KA+PLFH + +I  + S
Sbjct: 172 PATSPYAAIQKAFPLFHKDAIICMMLS 198


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +1

Query: 52  PEPSRSC---EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINF-SGWNRGYAFAMYTT 219
           PEP        + I  IP    ++ L  +F        +    +F +G  RG AFA + +
Sbjct: 223 PEPDEETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHS 282

Query: 220 EAEAGNAIRLFNNYMI 267
             EA   +++ N Y I
Sbjct: 283 PEEAKTVVQVLNGYEI 298


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 49  GPEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRG 195
           GPEP    +VF+  I      + L   F+  GE+F+  L +N ++G + G
Sbjct: 89  GPEPPT--QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLG 136


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 233 PASASVVYMAKAYPLFHPEKLIISLNSKSSPACWNRGTKLSSKQSCGILPMNTSQLREG 57
           PAS S   +  + P    +    SL   SSP   ++GTK  SK S   +     + R+G
Sbjct: 144 PASTSYEKLTVSSPNSFLKNQDESLFLSSSPITVSQGTKRKSKNSNSTVKKKKKRARKG 202


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 187 NRGYAFAMYTTEAEAGNAIRLFNN 258
           N+GY +  Y    +A NA+   NN
Sbjct: 139 NKGYCYIEYVYHDQAANAVDKMNN 162


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 294 PFDKQLSHIHIAHPADDAVRRDSAAPVRAHGRGTGG 401
           PFD + S I+   P      RD     R HG  TGG
Sbjct: 24  PFDLEPSRINQGVPVWKQEARDERNRKRFHGAFTGG 59


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 281 CQDGLIM*LLNKRMALPASASVVYMAKAYPLF 186
           C+   I      R+A P SASV   +K +PLF
Sbjct: 628 CEAAKISSFQLSRVATPLSASVRRPSKVFPLF 659


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 58  PSRSCE---VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINF-SGWNRGYAFAMYTTEA 225
           P++S E   + +  +  +  E+ +  LF   G +    L ++  +G+ +GYA   Y T  
Sbjct: 3   PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62

Query: 226 EAGNAI 243
           +A  A+
Sbjct: 63  QAQKAV 68


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/64 (25%), Positives = 23/64 (35%)
 Frame = +1

Query: 64  RSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAI 243
           R   V +G +     E  L   F   GE+    L       +R YAF  +    +A  A+
Sbjct: 4   RKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAM 63

Query: 244 RLFN 255
              N
Sbjct: 64  ENMN 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,801
Number of Sequences: 5004
Number of extensions: 32185
Number of successful extensions: 137
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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