Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18a18
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 90 1e-18
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 40 0.002
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 40 0.002
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 38 0.005
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 38 0.005
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 38 0.005
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 38 0.005
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 38 0.005
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 38 0.005
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 37 0.011
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 36 0.026
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 36 0.026
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 36 0.026
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 36 0.026
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 35 0.034
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 35 0.034
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.059
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 34 0.078
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 33 0.10
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.18
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 33 0.18
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 33 0.18
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 0.42
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 31 0.42
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z83102-8|CAB05465.3| 325|Caenorhabditis elegans Hypothetical pr... 30 1.3
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 2.9
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 29 2.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 2.9
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 2.9
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 28 5.1
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 28 5.1
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 28 5.1
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 28 5.1
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 28 5.1
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 28 5.1
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 27 6.8
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 27 6.8
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 27 6.8
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 27 6.8
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 27 6.8
U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated ... 27 9.0
U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated ... 27 9.0
U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated ... 27 9.0
U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated ... 27 9.0
U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 27 9.0
AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like ad... 27 9.0
AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like ad... 27 9.0
AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like ad... 27 9.0
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 89.8 bits (213), Expect = 1e-18
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Frame = +1
Query: 10 GQRIYRKATHAWTGPEPS---RSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-F 177
GQR + W GP + E+++G IP D FED+LVPLF+++G++++ RLM++
Sbjct: 177 GQRKFGGPPPDWEGPATGPAGQGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPM 236
Query: 178 SGWNRGYAFAMYTTEAEAGNAIRLFNNYMIRPSWQLGVCPSINNCRIFISRIPPTTPSAE 357
SG +RGYAF Y + +A A + ++ + I L V SI N R+FI IP T E
Sbjct: 237 SGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDE 296
Query: 358 IVRLLYALTDEVQEV 402
I+ L + V +V
Sbjct: 297 ILEELKTHAEGVVDV 311
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINF-SGWNRGYAFAMYTTEAEAGNAIRLF 252
V++G P ED L F QAG + R++ + +G RG+AF +T EA A A+ F
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 253 N 255
N
Sbjct: 66 N 66
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMY 213
++F+G+IP + E L LF+Q G+++EF ++ + ++G ++G AF Y
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLF 252
++FIG + ED + LF GEL E ++ G ++G AF Y +A AI
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISAL 184
Query: 253 NNYMIRP 273
+ P
Sbjct: 185 HGSQTMP 191
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMY 213
++F+G+IP + E L LF+Q G+++EF ++ + ++G ++G AF Y
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLF 252
++FIG + ED + LF GEL E ++ G ++G AF Y +A AI
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISAL 184
Query: 253 NNYMIRP 273
+ P
Sbjct: 185 HGSQTMP 191
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGNAIRLF 252
VF+G I +D ED++ +F +AG + +++ + +G +GY F + A AIR
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 253 NNY 261
N Y
Sbjct: 80 NGY 82
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLF 252
++FIG +P+ ED + L G L F L ++ G ++GYAFA Y AI
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 253 NNYMI 267
N +
Sbjct: 352 NGMQL 356
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/81 (24%), Positives = 40/81 (49%)
Frame = +1
Query: 25 RKATHAWTGPEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAF 204
R+ H G + R+ +++G + ED + LF Q G + + +++ F G N YAF
Sbjct: 33 REGFHLGNGSDEPRT--LYVGNLDSTVTEDFIATLFNQIGSVTKTKVI--FDGSNDPYAF 88
Query: 205 AMYTTEAEAGNAIRLFNNYMI 267
++ +A A++ N ++
Sbjct: 89 VEFSDHGQASQALQTMNKRLL 109
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLF 252
++FIG +P+ ED + L G L F L ++ G ++GYAFA Y AI
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 253 NNYMI 267
N +
Sbjct: 352 NGMQL 356
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLF 252
++FIG +P+ ED + L G L F L ++ G ++GYAFA Y AI
Sbjct: 267 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 253 NNYMI 267
N +
Sbjct: 327 NGMQL 331
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLF 252
++FIG +P+ ED + L G L F L ++ G ++GYAFA Y AI
Sbjct: 270 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 253 NNYMI 267
N +
Sbjct: 330 NGMQL 334
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 36.7 bits (81), Expect = 0.011
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 43 WTGPEPSRSCE-----VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFA 207
W E R+ E +F+GRI ++ E L F+ G++ + ++ + +G RGYAF
Sbjct: 90 WNPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFI 149
Query: 208 MYTTEAEAGNAIR 246
Y+ +AE A +
Sbjct: 150 EYSDKAEMHTAYK 162
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.5 bits (78), Expect = 0.026
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
+ + +P C E L F++ G++ + L G RG+AF + E A NA+ N
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSN 64
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 35.5 bits (78), Expect = 0.026
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
+FI + S+ F G + ++ I+ G+++GY F + TE A NAI+ N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 256 NYMI 267
++
Sbjct: 182 GMLL 185
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 35.5 bits (78), Expect = 0.026
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
+FI + S+ F G + ++ I+ G+++GY F + TE A NAI+ N
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 256 NYMI 267
++
Sbjct: 119 GMLL 122
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 35.5 bits (78), Expect = 0.026
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
+FI + S+ F G + ++ I+ G+++GY F + TE A NAI+ N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 256 NYMI 267
++
Sbjct: 182 GMLL 185
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.1 bits (77), Expect = 0.034
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 61 SRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGN 237
S+ V++G +P+ E+ + F G + R++ + +G RG+AF ++ EA A
Sbjct: 3 SQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQR 62
Query: 238 AIRLFN 255
A+ N
Sbjct: 63 AVEQLN 68
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 35.1 bits (77), Expect = 0.034
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGNAIRLF 252
V I RIP FE L+ F+Q G + R+ N +G ++G+A+ + +A A A
Sbjct: 34 VKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESM 93
Query: 253 NNYMI 267
N Y++
Sbjct: 94 NGYLM 98
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.059
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGNAIRLF 252
+ I +P ++ + LF GE+ +L+ + +G + GY F Y E +A A+ F
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSF 103
Query: 253 N-----NYMIRPSWQLGVCPSINNCRIFISRIPPTTPSAEI 360
N N I+ S+ I +++S IP + E+
Sbjct: 104 NGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHEL 144
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 33.9 bits (74), Expect = 0.078
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLF 252
+VF+ + +D L LF + G + R + + G +G AF + TEA A +
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVASG 743
Query: 253 NNYMIR 270
+ M+R
Sbjct: 744 DKLMLR 749
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 33.5 bits (73), Expect = 0.10
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 52 PEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLM-INFSGWNRGYAFAMYTTEAE 228
PE SR VF+G + + L F + GE+ E +++ N + +GY F Y +
Sbjct: 126 PETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRRED 185
Query: 229 AGNAIRLFN 255
A AI N
Sbjct: 186 AERAIDEMN 194
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 67 SCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGNAI 243
SC +++G + + ED + LF +AG++ + ++ F G+ F Y T +A A+
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELAL 95
Query: 244 RLFNN-----YMIRPSWQLG 288
+ +N +IR W G
Sbjct: 96 QNISNTRMDDRVIRADWDAG 115
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
VF+ ++ L +F + GE+ +M + G +G+ F + + AG A+ N
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 256 NYMIR-PSWQLGVC 294
+ ++ +L VC
Sbjct: 300 DSILEGTDCKLSVC 313
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
+FI + S+ F G + ++ + G ++GY F + TE A AI N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 256 NYMI 267
++
Sbjct: 207 GMLL 210
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
VF+ ++ L +F + GE+ +M + G +G+ F + + AG A+ N
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 256 NYMIR-PSWQLGVC 294
+ ++ +L VC
Sbjct: 300 DSILEGTDCKLSVC 313
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
+FI + S+ F G + ++ + G ++GY F + TE A AI N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 256 NYMI 267
++
Sbjct: 207 GMLL 210
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
+F+G P E L F++ + + +++ + G ++GY F + TE +A +L
Sbjct: 68 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLTP 127
Query: 256 NYMIRPSWQLGVCPSIN--NCRIFISRIPPTTPS 351
+ S +L + P+I N F TPS
Sbjct: 128 KQLEFRSRKLNLGPAIRKINSNSFQPSYAIATPS 161
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFN 255
+F+G P E L F++ + + +++ + G ++GY F + TE +A +L
Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLTP 128
Query: 256 NYMIRPSWQLGVCPSIN--NCRIFISRIPPTTPS 351
+ S +L + P+I N F TPS
Sbjct: 129 KQLEFRSRKLNLGPAIRKINSNSFQPSYAIATPS 162
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 55 EPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINF-SGWNRGYAFAMYTTEAEA 231
+ S+ VF+G + D + L F + GE+ E +++ + + ++GY F + + A
Sbjct: 130 DTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNA 189
Query: 232 GNAIRLFNNYMI 267
NAI N I
Sbjct: 190 ENAIAGMNGKWI 201
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.42
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 SCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEAGNAI 243
S ++IG + + E ++ +F Q GE+ L+ + +G ++G+AF Y + A+
Sbjct: 37 SAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAV 96
Query: 244 RLFN 255
FN
Sbjct: 97 DNFN 100
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 55 EPSRSCEVFIGRIPHDCFEDSLVPLFQ-QAGELFEFRLMIN-FSGWNRGYAFAMYTTEAE 228
E + +F+G +P + ED+L+ F Q G + R++ + +G +G+AF + ++
Sbjct: 241 EFGKDMAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSS 300
Query: 229 AGNAIRL 249
A+ +
Sbjct: 301 VSLALSM 307
>Z83102-8|CAB05465.3| 325|Caenorhabditis elegans Hypothetical
protein C54C8.3 protein.
Length = 325
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 7 NGQRIYRKATHAWTGPEPSRSCEVF 81
+G I+R TH W PE S SC F
Sbjct: 212 SGANIFRDKTHRWYVPESSYSCSKF 236
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 55 EPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEA 231
EP ++F+G + + +D + + Q GE+ + +M + + +RG+ F ++ + E
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 232 GNAIR 246
A++
Sbjct: 78 DAAMK 82
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 49 GPEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGW-NRGYAFAMYTTEA 225
G + ++F+G +P+ + +L F+Q G++ E ++ + + +RGY F A
Sbjct: 28 GSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRA 87
Query: 226 EAGNAIR 246
A A +
Sbjct: 88 SAERACK 94
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 55 EPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEA 231
EP ++F+G + + +D + + Q GE+ + +M + + +RG+ F ++ + E
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 232 GNAIR 246
A++
Sbjct: 78 DAAMK 82
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 55 EPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTEAEA 231
EP ++F+G + + +D + + Q GE+ + +M + + +RG+ F ++ + E
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 232 GNAIR 246
A++
Sbjct: 78 DAAMK 82
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEA 225
++FIG++ E++L +F + G + + ++ + G +RG AF +T +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRS 193
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEA 225
++FIG++ E++L +F + G + + ++ + G +RG AF +T +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRS 193
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEA 225
++FIG++ E++L +F + G + + ++ + G +RG AF +T +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRS 193
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEA 225
++FIG++ E++L +F + G + + ++ + G +RG AF +T +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRS 193
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEA 225
++FIG++ E++L +F + G + + ++ + G +RG AF +T +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRS 193
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 73 EVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEA 225
++FIG++ E++L +F + G + + ++ + G +RG AF +T +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRS 193
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEA 231
+F+G +P D E + +F++ G++ E + + + YAF M+ T +A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPIN-TDAAYAFVMFQTVDQA 221
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEA 231
+F+G +P D E + +F++ G++ E + + + YAF M+ T +A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPIN-TDAAYAFVMFQTVDQA 221
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 76 VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEA 231
+F+G +P D E + +F++ G++ E + + + YAF M+ T +A
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPIN-TDAAYAFVMFQTVDQA 198
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 55 EPSRSCE---VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTE 222
+P++S E VF+G +P D E L F+Q G++ + + + R +AF ++ E
Sbjct: 102 KPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEE 161
Query: 223 AEAGNA 240
A A
Sbjct: 162 ESADKA 167
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 55 EPSRSCE---VFIGRIPHDCFEDSLVPLFQQAGELFEFRLMIN-FSGWNRGYAFAMYTTE 222
+P++S E VF+G +P D E L F+Q G++ + + + R +AF ++ E
Sbjct: 102 KPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEE 161
Query: 223 AEAGNA 240
A A
Sbjct: 162 ESADKA 167
>U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated
protein 11, isoform f protein.
Length = 198
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 197 YPLFHPEKLI-----ISLNSKSSPACWNRGTKLSSKQSCG 93
YP HP+ L +SLN + +PA WN T S G
Sbjct: 80 YPNAHPDDLARMTAQMSLNQQGAPAGWNTTTSAVSNNPFG 119
>U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated
protein 11, isoform c protein.
Length = 657
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 197 YPLFHPEKLI-----ISLNSKSSPACWNRGTKLSSKQSCG 93
YP HP+ L +SLN + +PA WN T S G
Sbjct: 539 YPNAHPDDLARMTAQMSLNQQGAPAGWNTTTSAVSNNPFG 578
>U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated
protein 11, isoform a protein.
Length = 586
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 197 YPLFHPEKLI-----ISLNSKSSPACWNRGTKLSSKQSCG 93
YP HP+ L +SLN + +PA WN T S G
Sbjct: 468 YPNAHPDDLARMTAQMSLNQQGAPAGWNTTTSAVSNNPFG 507
>U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated
protein 11, isoform b protein.
Length = 546
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 197 YPLFHPEKLI-----ISLNSKSSPACWNRGTKLSSKQSCG 93
YP HP+ L +SLN + +PA WN T S G
Sbjct: 428 YPNAHPDDLARMTAQMSLNQQGAPAGWNTTTSAVSNNPFG 467
>U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated
protein 11, isoform d protein.
Length = 534
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 197 YPLFHPEKLI-----ISLNSKSSPACWNRGTKLSSKQSCG 93
YP HP+ L +SLN + +PA WN T S G
Sbjct: 416 YPNAHPDDLARMTAQMSLNQQGAPAGWNTTTSAVSNNPFG 455
>AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 289
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 197 YPLFHPEKLI-----ISLNSKSSPACWNRGTKLSSKQSCG 93
YP HP+ L +SLN + +PA WN T S G
Sbjct: 171 YPNAHPDDLARMTAQMSLNQQGAPAGWNTTTSAVSNNPFG 210
>AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 546
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 197 YPLFHPEKLI-----ISLNSKSSPACWNRGTKLSSKQSCG 93
YP HP+ L +SLN + +PA WN T S G
Sbjct: 428 YPNAHPDDLARMTAQMSLNQQGAPAGWNTTTSAVSNNPFG 467
>AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 586
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 197 YPLFHPEKLI-----ISLNSKSSPACWNRGTKLSSKQSCG 93
YP HP+ L +SLN + +PA WN T S G
Sbjct: 468 YPNAHPDDLARMTAQMSLNQQGAPAGWNTTTSAVSNNPFG 507
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,080,240
Number of Sequences: 27780
Number of extensions: 193411
Number of successful extensions: 681
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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